PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0212.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 404aa    MW: 44789.7 Da    PI: 10.1397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0212.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12247293354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+ +ErrRR riN  f++Lr++lP++      K +Ka++L ++v+Y ++L
  Bostr.25542s0212.1.p 247 KKHSDAERRRRLRINCQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 293
                           68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-12235299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.008244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-13247298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10247293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-9247298No hitNo description
SMARTSM003534.6E-12250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSSGEGASQN RTATENEPIE TCHKLLKSGD FLGVRSIVHM NQLESSKRND LLEQARAICD  60
VLIAAENRLP NGLMDCYGMI RVNRNGPVLL EDFEKLMKLL DKKQNHFPFC QEAADKALQL  120
GLCCPSLSSR HITISLSPNT TTVKPKEMAV VVFAERSFIY IQQINIPSIV LRTSPSLCVA  180
MVLLHHLEQG MRPISRCYNP TANSTTMGRN YHNFTVVGAA TSSKLFSRGF SVTKPKSKTE  240
SKEAAAKKHS DAERRRRLRI NCQFATLRTI LPNLVKQDKA SVLGETVRYF NELKKMVQDI  300
PTTPSLEDSL RLGHCNNNRD LARVLFSCSD REGLMSEVAE SMKAAKTKAV RAEIMTVGGR  360
TKCALFVQGV NRNEGLVKLK KSLKPVVNGK ASPEAKNNNN QQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0212.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775870.0AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874989.11e-133LOW QUALITY PROTEIN: transcription factor bHLH131
SwissprotP0CB251e-127BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A078ISV31e-140A0A078ISV3_BRANA; BnaC03g61070D protein
STRINGBostr.25542s0212.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-169bHLH family protein