 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.25463s0384.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
MYB |
| Protein Properties |
Length: 237aa MW: 26315.6 Da PI: 9.012 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.25463s0384.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl
Bostr.25463s0384.1.p 14 KGAWTKEEDQRLIDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 57.8 | 2.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T eEd+++++++ +lG++ W++Ia +++ gRt++++k++w+++
Bostr.25463s0384.1.p 67 RGNFTDEEDQIIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY 60
LRPDLKRGNF TDEEDQIIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSHG 120
IDPQTHRPIN DTKKTVPSQI VSVPIQNDAV EYSFSNLAVK PKTENSSDNG ASASGTTTDE 180
DLRGECYYSH NSGHIELNLD LTLGFGSGSG RVVGAGSSAD SKPWRDQVMA ARLSLL*
|
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | ATU26936 | 0.0 | U26936.1 Arabidopsis thaliana clone myb6 DNA-binding protein mRNA, complete cds. |
| GenBank | AY086813 | 0.0 | AY086813.1 Arabidopsis thaliana clone 28019 mRNA, complete sequence. |
| GenBank | AY519604 | 0.0 | AY519604.1 Arabidopsis thaliana MYB transcription factor (At4g09460) mRNA, complete cds. |
| GenBank | BT004171 | 0.0 | BT004171.1 Arabidopsis thaliana clone RAFL15-40-D03 (R20880) putative myb family transcription factor (At4g09460) mRNA, complete cds. |
| GenBank | BT005085 | 0.0 | BT005085.1 Arabidopsis thaliana clone U20880 putative myb family transcription factor (At4g09460) mRNA, complete cds. |
