PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25463s0156.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 367aa    MW: 39060.5 Da    PI: 4.5902
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25463s0156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.57.1e-36521442103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+ ++elisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+
  Bostr.25463s0156.1.p  52 FLTKTYQLVDDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGE 131
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k ll++i+r+k +
  Bostr.25463s0156.1.p 132 KILLRDIQRRKIS 144
                           **********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-5848141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.56E-3449141IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.8E-3849141IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-205275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-20103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1708.4E-5215242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPGEQTGETP TVAGVGGGGT GCSAGNSGGS SGCGAGGGGG GGDSQRSIPT PFLTKTYQLV  60
DDPVYDELIS WNEDGTTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW  120
EFSNECFRRG EKILLRDIQR RKISQPAMAA AAAAVAASAV TVAAVPVTVA HAVSPSNSGE  180
EQVISCNSSP AAAAAATGLV GVGLQRTTSC TTAPELVEEN ERLRKENMQL SQELTKLKGL  240
YANIYTLMAN FTPSQADCAN LLTEGKPLDL LPERQGMSDE AMAMASRIDT GIGLKLDEDL  300
TPRLFGVSIG VKRARREEEL GAPEEEDGDR QEAVTREGEQ GSDVKAEPME ENNSSNHNGP  360
WLELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-275214110110Heat shock factor protein 1
5hdn_A2e-275214110110Heat shock factor protein 1
5hdn_B2e-275214110110Heat shock factor protein 1
5hdn_C2e-275214110110Heat shock factor protein 1
5hdn_D2e-275214110110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25463s0156.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0932060.0AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds.
GenBankBT0084710.0BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455582.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-169HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4N0260.0V4N026_EUTSA; Uncharacterized protein
STRINGBostr.25463s0156.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-154HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]