PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25463s0011.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 529aa    MW: 58054.2 Da    PI: 7.1162
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25463s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30292350259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed +++++tYeg+Hnh+
  Bostr.25463s0011.1.p 292 SDGCQWRKYGQKMAKGNPCPRAYYRCTMVnGCPVRKQVQRCAEDRTILITTYEGNHNHP 350
                           7***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-34276352IPR003657WRKY domain
SuperFamilySSF1182907.06E-28284352IPR003657WRKY domain
PROSITE profilePS5081129.769286352IPR003657WRKY domain
SMARTSM007741.4E-36291351IPR003657WRKY domain
PfamPF031061.8E-26293350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MFRFPVSLGG GPRDNSKPSD EQHHRAVVDE VDFFRSAEKR DRVSRDEQNI IADETHRVHV  60
KRENPRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGF SVDMEEKRTN CENAQLRDEL  120
KKAGEDNQRL KEMLSQTTNN FNSLQMQLVA VMRQQEDHHH LTKTENKDNA KNRHEVPEMV  180
PRQFIDLGPP SDEVSSEERT TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETEPNGWRNP  240
KKVPKHHASS SNCGGNGNGN GNSNVIEQSS AEATMRKARV SVRARSEAPM LSDGCQWRKY  300
GQKMAKGNPC PRAYYRCTMV NGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMSMAS  360
TTTAAASMLL SGSTMSSQDG LMNPTNLLAR TILPCSSSMA TISASAPFPT ITLDLTDSSN  420
GNNLTNNPLM QFSQRSGFAE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA  480
TTAAIASNPN FAAALAAAIT SIINGSNNQH NGNNNNSNVT TSNVDNRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-21282352877Probable WRKY transcription factor 4
2ayd_A2e-21278354176WRKY transcription factor 1
2lex_A3e-21282352877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25463s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526500.0AY052650.1 Arabidopsis thaliana WRKY transcription factor 42 (WRKY42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496182.10.0PREDICTED: WRKY transcription factor 42
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A178UY780.0A0A178UY78_ARATH; WRKY42
STRINGBostr.25463s0011.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein