PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 368aa MW: 41211.5 Da PI: 10.1063

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25375s0045.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.9	9.8e-22	39	82	7	50
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 s + ++f++Rr++++KKA ELSvLC++ev+vi ++s g+l++++ Bostr.25375s0045.1.p 39 SSKATSFIRRRKTVFKKALELSVLCGIEVCVICYGSGGELKTWP 82 6789***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.3E-8	14	84	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.867	39	85	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.60E-19	39	101	No hit	No description
SuperFamily	SSF55455	3.14E-17	39	105	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-14	39	81	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MVSSSSCSPS SSSSTKKKTT NSSQIQQTLS KKPNSASFSS KATSFIRRRK TVFKKALELS 60 VLCGIEVCVI CYGSGGELKT WPEDREKVKG MARRYGALSE TKRRKGSKKK KKVRRVFKVK 120 YPVLDPRFDN YSVEQLTGMI QSLERNLTRI QHRIHAVVGG QGQKKIQYRN MGNQELMMTT 180 TMNHLQQQSN QVSMFLFDHG NGNISQIPVS AYASALNQGQ SLPPIPPELM IYPNSDVGNY 240 SGSLGVQGTG INGFQNMNML TCNNINNVND FSKQIDQNSN EFENTNMYIR NNFNVEDYSV 300 LLGVQGTVIN ELQSMNMHDY NNNSVNANVL SHQLVQFPTQ QQHRAFNSDQ SGNNNIWSLY 360 DLSQSIL*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MVSSSSCSPS SSSSTKKKTT NSSQIQQTLS KKPNSASFSS KATSFIRRRK TVFKKALELS  60
VLCGIEVCVI CYGSGGELKT WPEDREKVKG MARRYGALSE TKRRKGSKKK KKVRRVFKVK  120
YPVLDPRFDN YSVEQLTGMI QSLERNLTRI QHRIHAVVGG QGQKKIQYRN MGNQELMMTT  180
TMNHLQQQSN QVSMFLFDHG NGNISQIPVS AYASALNQGQ SLPPIPPELM IYPNSDVGNY  240
SGSLGVQGTG INGFQNMNML TCNNINNVND FSKQIDQNSN EFENTNMYIR NNFNVEDYSV  300
LLGVQGTVIN ELQSMNMHDY NNNSVNANVL SHQLVQFPTQ QQHRAFNSDQ SGNNNIWSLY  360
DLSQSIL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25375s0045.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_188495.1	1e-162	AGAMOUS-like 103
Swissprot	Q9LSB2	1e-163	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A178V6E8	1e-158	A0A178V6E8_ARATH; AGL103
STRING	Bostr.25375s0045.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-141	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	Bostr.25375s0045.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]