PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25375s0043.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 394aa    MW: 43974.5 Da    PI: 9.6571
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25375s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.6e-223983650
                          HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           s + ++f++R+++++KKA ELSvLC++ev+vi ++s+g+l++++
  Bostr.25375s0043.1.p 39 LSSKATSFIRRLETVFKKALELSVLCGIEVCVICYGSDGELKTWP 83
                          56789***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-51585IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.8584086IPR002100Transcription factor, MADS-box
CDDcd002665.82E-1940110No hitNo description
PfamPF003191.5E-134082IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-1740115IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVSSSSCSPS SSSSTTKKKS TNFSQIQQTL FKKPNSASLS SKATSFIRRL ETVFKKALEL  60
SVLCGIEVCV ICYGSDGELK TWPEDREKVK GMARRYGALS ETKRSKGSVA LHEFLEMNNK  120
KKKKKKVRRV SKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRIHA VVGGQEQRKI  180
QYMNMGNQDL MMTTTMNHLQ QQSNQVSVFL FNHGNGNISQ ISVSAYASAL NQGQSLPPIP  240
TELMIYPNTD VGNYSGSLGI QGTGINGFNN MNMLTCNNIN DFSKQIDQNS KVESYPSLLG  300
AQGYGINEFV NTNMYTRNNF NVEDYSGLLG VQGTVTNELQ SMNMHDYSNN SVNANGLSHQ  360
LVQFPTQQQH RAFNSDQSGN NIWSLYDLSQ SLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125KKKKKKK
2120128KKKKKKVRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25375s0043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885269.21e-177LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-178AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A178V6E81e-173A0A178V6E8_ARATH; AGL103
STRINGBostr.25375s0043.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-161AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]