PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 394aa MW: 43974.5 Da PI: 9.6571

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25375s0043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.7	5.6e-22	39	83	6	50
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 s + ++f++R+++++KKA ELSvLC++ev+vi ++s+g+l++++ Bostr.25375s0043.1.p 39 LSSKATSFIRRLETVFKKALELSVLCGIEVCVICYGSDGELKTWP 83 56789***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.8E-5	15	85	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.858	40	86	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.82E-19	40	110	No hit	No description
Pfam	PF00319	1.5E-13	40	82	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.16E-17	40	115	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MVSSSSCSPS SSSSTTKKKS TNFSQIQQTL FKKPNSASLS SKATSFIRRL ETVFKKALEL 60 SVLCGIEVCV ICYGSDGELK TWPEDREKVK GMARRYGALS ETKRSKGSVA LHEFLEMNNK 120 KKKKKKVRRV SKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRIHA VVGGQEQRKI 180 QYMNMGNQDL MMTTTMNHLQ QQSNQVSVFL FNHGNGNISQ ISVSAYASAL NQGQSLPPIP 240 TELMIYPNTD VGNYSGSLGI QGTGINGFNN MNMLTCNNIN DFSKQIDQNS KVESYPSLLG 300 AQGYGINEFV NTNMYTRNNF NVEDYSGLLG VQGTVTNELQ SMNMHDYSNN SVNANGLSHQ 360 LVQFPTQQQH RAFNSDQSGN NIWSLYDLSQ SLL*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MVSSSSCSPS SSSSTTKKKS TNFSQIQQTL FKKPNSASLS SKATSFIRRL ETVFKKALEL  60
SVLCGIEVCV ICYGSDGELK TWPEDREKVK GMARRYGALS ETKRSKGSVA LHEFLEMNNK  120
KKKKKKVRRV SKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRIHA VVGGQEQRKI  180
QYMNMGNQDL MMTTTMNHLQ QQSNQVSVFL FNHGNGNISQ ISVSAYASAL NQGQSLPPIP  240
TELMIYPNTD VGNYSGSLGI QGTGINGFNN MNMLTCNNIN DFSKQIDQNS KVESYPSLLG  300
AQGYGINEFV NTNMYTRNNF NVEDYSGLLG VQGTVTNELQ SMNMHDYSNN SVNANGLSHQ  360
LVQFPTQQQH RAFNSDQSGN NIWSLYDLSQ SLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	KKKKKKK
2	120	128	KKKKKKVRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25375s0043.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885269.2	1e-177	LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-178	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A178V6E8	1e-173	A0A178V6E8_ARATH; AGL103
STRING	Bostr.25375s0043.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-161	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	Bostr.25375s0043.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]