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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.25375s0043.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
M-type_MADS |
Protein Properties |
Length: 394aa MW: 43974.5 Da PI: 9.6571 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.25375s0043.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 68.7 | 5.6e-22 | 39 | 83 | 6 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
s + ++f++R+++++KKA ELSvLC++ev+vi ++s+g+l++++
Bostr.25375s0043.1.p 39 LSSKATSFIRRLETVFKKALELSVLCGIEVCVICYGSDGELKTWP 83
56789***************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MVSSSSCSPS SSSSTTKKKS TNFSQIQQTL FKKPNSASLS SKATSFIRRL ETVFKKALEL 60 SVLCGIEVCV ICYGSDGELK TWPEDREKVK GMARRYGALS ETKRSKGSVA LHEFLEMNNK 120 KKKKKKVRRV SKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRIHA VVGGQEQRKI 180 QYMNMGNQDL MMTTTMNHLQ QQSNQVSVFL FNHGNGNISQ ISVSAYASAL NQGQSLPPIP 240 TELMIYPNTD VGNYSGSLGI QGTGINGFNN MNMLTCNNIN DFSKQIDQNS KVESYPSLLG 300 AQGYGINEFV NTNMYTRNNF NVEDYSGLLG VQGTVTNELQ SMNMHDYSNN SVNANGLSHQ 360 LVQFPTQQQH RAFNSDQSGN NIWSLYDLSQ SLL*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 119 | 125 | KKKKKKK |
2 | 120 | 128 | KKKKKKVRR |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |