PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Bostr.25219s0396.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 150aa MW: 16532.8 Da PI: 7.4134

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25219s0396.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6e-05	37	76	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ ++++ L++++ + +K + a++L A++YI L Bostr.25219s0396.2.p 37 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAMNYIEFL 76 67899999*********99.....9*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.7E-8	27	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.709	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-4	32	81	No hit	No description
SMART	SM00353	0.0037	35	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-10	37	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MEFSRDAGMM MENKRNVCSL GESSIKRHKS DLSFNSKERK DKVGERISAL QQIVSPYGKT 60 DTASVLLDAM NYIEFLHDQV KVLSAPYLQT IPDATQGELE QYSLRNRGLC LVPMENTVGV 120 AQSNGADIWA SVKTPLSPAF SVTSQSPFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25219s0396.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY087858	0.0	AY087858.1 Arabidopsis thaliana clone 3900 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010475285.1	1e-105	PREDICTED: transcription factor bHLH113-like
Swissprot	Q7XJU2	1e-106	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A178W7Z9	1e-103	A0A178W7Z9_ARATH; Uncharacterized protein
STRING	Bostr.25219s0396.1.p	1e-108	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	1e-108	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.25219s0396.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]