PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.25219s0329.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 231aa MW: 26434.9 Da PI: 9.5786

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25219s0329.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.9	1.9e-34	48	139	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g ++++ ++l+ Bostr.25219s0329.1.p 48 ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRICEELKL 136 7***********************************************************************************99998 PP DUF260 90 lka 92 k+ Bostr.25219s0329.1.p 137 YKS 139 775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.264	47	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-31	48	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MFKLLLFCDI RFLLFPCQLL IYTDMMQRNS NTTTTNNNIS NNSSSHQACA SCKHQRKKCN 60 NECILSPYFP ARKTKEFQAV HKVFGVSNVQ KMVRTVREED RTKLSDSLTW EALWRQKDPV 120 LGSYGEYRRI CEELKLYKSL VHNQPLLGWD NNQRVFNNNN NNNNKNGLLM NSSGSGGFSV 180 NNNGVGVNAE IVNGGYTSRN LQGGWENLKH DQRQQCYAVI NGFKQHYLPL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	40	125	3	88	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	40	125	3	88	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25219s0329.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F9P14	0.0	AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002892332.1	1e-126	LOB domain-containing protein 2
Refseq	XP_020869821.1	1e-126	LOB domain-containing protein 2
Swissprot	Q9LNB9	1e-123	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	D7KG18	1e-124	D7KG18_ARALL; Uncharacterized protein
STRING	Bostr.25219s0329.1.p	1e-172	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-96	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Bostr.25219s0329.1.p