PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.25219s0157.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 188aa MW: 20976.9 Da PI: 4.6758

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25219s0157.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.7	2e-43	32	130	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeAear+rdPvyG++g i +lq+q+++ Bostr.25219s0157.1.p 32 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVKSMVYEAEARIRDPVYGCAGAIYHLQRQVSE 120 7************************************************************************************** PP DUF260 90 lkaelallke 99 l+a+la+++ Bostr.25219s0157.1.p 121 LQAQLAKAQV 130 ****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.294	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-43	32	129	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MESNGDASAA TTPVISSCSP VPPLLPRVVL SPCAACKILR RRCAEKCVLA PYFPPTDPAK 60 FTIAHRVFGA SNIIKFLQEL PESQRTDAVK SMVYEAEARI RDPVYGCAGA IYHLQRQVSE 120 LQAQLAKAQV EMVNMEFQKS NLLDLIYNMD QQNQEQDNMS FESNDLGFLE DNSNTNSSML 180 WWDPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	31	134	10	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	31	134	10	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25219s0157.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473841	0.0	AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_172268.1	1e-115	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-116	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A178WM56	1e-114	A0A178WM56_ARATH; LBD1
STRING	Bostr.25219s0157.1.p	1e-138	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-103	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Bostr.25219s0157.1.p