PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0116.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 342aa    MW: 39088.7 Da    PI: 8.7363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05184203120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           + C++C+k+F+r  n++ H+
  Bostr.25219s0116.1.p 184 FACSICSKTFNRYNNMQMHM 203
                           78*****************9 PP
2zf-C2H210.90.0014269291123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cgk    k + ++H +++
  Bostr.25219s0116.1.p 269 FSCGKCGKALAVKGDWRTHEKNC 291
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.98E-9163207No hitNo description
PROSITE profilePS5015710.45184211IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5184203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17184206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SMARTSM00355170232264IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.76E-5251289No hitNo description
Gene3DG3DSA:3.30.160.606.9E-4255289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190269289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSLMNPYEKG LSYESPSFIE WLKPPSSTSS PSVLYRMKTR DAISRSNHHQ SQMNMLERSL  60
FLYQPQEPLN TSIQCLPLLN KLMENKSRQA LDDIKEESKD DVVTLQIGLP NYHRGNSAED  120
DSDTTSDHLK KPIKREIIDD GVVMMKKRRK MKFDEEMIDS DMEVCGKRFW IPSPAQIHVG  180
PMQFACSICS KTFNRYNNMQ MHMWGHGSEF RKGADSLKGT TQPAAILRLP CYCCAEGCKN  240
NINHPRAKPL KDFRTLQTHY KRKHGSKPFS CGKCGKALAV KGDWRTHEKN CGKLWYCICG  300
SDFKHKRSLK DHIRSFGIGH SPHPSLSFDG FEEDTECVTT E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0116.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458063.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A178WMP30.0A0A178WMP3_ARATH; WIP3
TrEMBLR0II760.0R0II76_9BRAS; Uncharacterized protein
STRINGBostr.25219s0116.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]