PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24513s0175.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 370aa    MW: 41751.2 Da    PI: 10.3145
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24513s0175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-31303361360
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                           D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  Bostr.24513s0175.1.p 303 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 361
                           99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-17253299IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.7E-33289361IPR003657WRKY domain
PROSITE profilePS5081130.366296362IPR003657WRKY domain
SuperFamilySSF1182901.31E-26299361IPR003657WRKY domain
SMARTSM007742.0E-37301361IPR003657WRKY domain
PfamPF031061.9E-26303360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEIEGTNRV AVESCHRVLN LLCRPQQQDH VGFDRNLVSE TREAVFRFKR VASLLSSSVG  60
HARFRRAKKL QPHLSQSIFL DPCHQRTELA SSSQKAPVLR SGFQELSLRH SDSLTLGTRS  120
FSLNSNAKAP LLQLNQQAMS SSNYPNLFPE KQQQQLQQQQ QQQQQLHERL QAHHLHHQQQ  180
QLQKHQAEIM LRKCNGGISL SFDNSSCTPT MSSTRSFVSS LSMDGSVANI EGKNSFHLVG  240
VPSSTDQNSQ HSKRKCPMKG DEHGSLKCGS SSRCHCSKKR KHRVRRSIRV PAISNKVADI  300
PPDDYSWRKY GQKPIKGSPY PRGYYKCSSM RGCPARKHVE RCLEDPAMLI VTYEAEHNHP  360
KLPSQAITT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20289364276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24513s0175.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727470.0AF272747.1 Arabidopsis thaliana WRKY DNA-binding protein 21 (WRKY21) mRNA, complete cds.
GenBankAY1364410.0AY136441.1 Arabidopsis thaliana expressed protein (At2g30590) mRNA, complete cds.
GenBankBT0002310.0BT000231.1 Arabidopsis thaliana expressed protein (At2g30590) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410164.10.0probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV4M9740.0V4M974_EUTSA; Uncharacterized protein
STRINGBostr.24513s0175.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.10.0WRKY DNA-binding protein 21