PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 734aa MW: 81063.4 Da PI: 6.3806

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.24513s0093.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00064	570	607	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Bostr.24513s0093.1.p 570 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 607 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.1E-31	6	162	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	6.53E-4	551	608	No hit	No description
PROSITE profile	PS50888	11.28	557	606	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-4	570	625	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-5	570	613	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MGSTSQEIVR SFCSNTDWNY AVFWKLNHRS RMVLTLEDAY YDNHGMNNSL EVKDSSVIPK 60 NLHGAHDPLG LAVAKMSYHV YSLGEGIVGQ VAVSGEHQWV FPEYYDNCHS EFEFHNVWES 120 QISGGIKTIV VVAVGPCGVV QLGSLRKVNE DVNLVNHIRH LFLALRDPLA DHAANLMQCN 180 MNNSLCLPKI PSEGLHAKAF PDCSGEVDKA MDVEESNILS QYKTSRRDSL PYNTPPSCLL 240 MENAAQVVGG REVVQGSTCG SYSGVTFGFP IDLVDAKHEN QVGTNIVSDA PHVGMTSGCK 300 DPRGLDPNLQ LYMKNHVLNN TSSSALTIEA ERMITGQSYP GLGSTFHASS RTEKESSYQN 360 EVFQLSENHG NKYVKETERM LGRKCESSRF DALISPGYTF AGSELLEALG SAFKHTSTGQ 420 EELLKSEHCS TIRSTDDMRH SKHTFDPGPE NLLDAVVANV CQSDGNARDD MLSSRSVQSL 480 LTTMEVAEPS GQKKHNIVNP VDSAMNQLPL VEVDTQQNSS DICGAFSSIG FSSTYPSSSS 540 DQFQTSPDMP KKNKKRAKPG ESSRPRPRDR QLIQDRIKEL RELVPNGSKC SIDSLLERTI 600 KHMLFLQNVT KHADKLSKSA NSKMQQKETG MQGSSCAVEV GGHLQVCSII VENLNKQGMV 660 LIEMLCEECS HFLEIANVIR SLDLVILRGI TETQGEKTWI CFVTESQNSK VMQRMDILWS 720 LVQIFQPKAN GKR*

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MGSTSQEIVR SFCSNTDWNY AVFWKLNHRS RMVLTLEDAY YDNHGMNNSL EVKDSSVIPK  60
NLHGAHDPLG LAVAKMSYHV YSLGEGIVGQ VAVSGEHQWV FPEYYDNCHS EFEFHNVWES  120
QISGGIKTIV VVAVGPCGVV QLGSLRKVNE DVNLVNHIRH LFLALRDPLA DHAANLMQCN  180
MNNSLCLPKI PSEGLHAKAF PDCSGEVDKA MDVEESNILS QYKTSRRDSL PYNTPPSCLL  240
MENAAQVVGG REVVQGSTCG SYSGVTFGFP IDLVDAKHEN QVGTNIVSDA PHVGMTSGCK  300
DPRGLDPNLQ LYMKNHVLNN TSSSALTIEA ERMITGQSYP GLGSTFHASS RTEKESSYQN  360
EVFQLSENHG NKYVKETERM LGRKCESSRF DALISPGYTF AGSELLEALG SAFKHTSTGQ  420
EELLKSEHCS TIRSTDDMRH SKHTFDPGPE NLLDAVVANV CQSDGNARDD MLSSRSVQSL  480
LTTMEVAEPS GQKKHNIVNP VDSAMNQLPL VEVDTQQNSS DICGAFSSIG FSSTYPSSSS  540
DQFQTSPDMP KKNKKRAKPG ESSRPRPRDR QLIQDRIKEL RELVPNGSKC SIDSLLERTI  600
KHMLFLQNVT KHADKLSKSA NSKMQQKETG MQGSSCAVEV GGHLQVCSII VENLNKQGMV  660
LIEMLCEECS HFLEIANVIR SLDLVILRGI TETQGEKTWI CFVTESQNSK VMQRMDILWS  720
LVQIFQPKAN GKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.24513s0093.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY954808	0.0	AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510215.1	0.0	PREDICTED: transcription factor bHLH155 isoform X1
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	R0HM95	0.0	R0HM95_9BRAS; Uncharacterized protein
STRING	Bostr.24513s0093.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Bostr.24513s0093.1.p

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]