PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.24399s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 147aa MW: 16803.2 Da PI: 9.4337 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.6 | 1.1e-31 | 91 | 145 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+++LH++Fv+ave+LGG++kAtPk+++e+m+v+g++l+hvkSHLQk+Rl Bostr.24399s0035.1.p 91 KARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEMMEVEGIALHHVKSHLQKFRL 145 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 88 | 145 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-14 | 90 | 145 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-27 | 91 | 146 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.3E-6 | 93 | 143 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MKKKEKGKEV VTFEENPSTS VHHLDHFHHK EKVSMLLSEQ EIEVVLQSNK ETYKENLEKS 60 KKDNTEKAGI EKGKSSSSKI TPCIFYTSDE KARLRWSSDL HDCFVNAVEK LGGPNKATPK 120 SVKEMMEVEG IALHHVKSHL QKFRLGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-19 | 91 | 147 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.24399s0035.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886266.1 | 5e-90 | transcription repressor KAN1 | ||||
TrEMBL | D7L9C8 | 2e-88 | D7L9C8_ARALL; Uncharacterized protein | ||||
STRING | Bostr.24399s0035.1.p | 1e-103 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13406 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06020.1 | 1e-75 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.24399s0035.1.p |