PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24340s0006.3.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 468aa    MW: 50825.4 Da    PI: 9.3733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24340s0006.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-0582104123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ C+k F r  nL+ H r H
  Bostr.24340s0006.3.p  82 FICEVCNKGFQREQNLQLHRRGH 104
                           89*******************88 PP
2zf-C2H212.90.00034158180123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Bostr.24340s0006.3.p 158 WKCDKCSKRYAVQSDWKAHSKTC 180
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-781104No hitNo description
Gene3DG3DSA:3.30.160.605.0E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9982104IPR007087Zinc finger, C2H2
SMARTSM003550.005282104IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-582104IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355120123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-7153178No hitNo description
SMARTSM00355140158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSSSYNNSIS SSSTQSFLLS GAGAGVRANN FNRDQETAMT MIQQPNSVAP PPKKRRNQPG  60
NPNPDAEVIA LSPKTIMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKSNKEVRR  120
KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QESARNPTVS FTAMAAAGGG GGRHSFYGSA  240
ASALSHNHFG NSPTSGFTPL AAGYNLNRSS SEKFEEFVPQ SANPNPGTPA NFFMQCSSNQ  300
GLLAQNDQSL MNQHGMLNLG DNINSNNNNL FNLGYFQDTK NPDQTSVPSL FTSGADNNDP  360
SALLRGLTSS SSSNVVVNDF GDTDNGNLQG LMNSLGATTD HQSRSGSIFD LHFGNNLSMG  420
GSDRLTLDFL GVNGGIVSTI NGRGGRNGAP LDTEMKFAHP NHPFGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34154220369Zinc finger protein JACKDAW
5b3h_F4e-34154220369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24340s0006.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531830.0AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869197.10.0protein indeterminate-domain 6, chloroplastic isoform X1
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLE4MXD60.0E4MXD6_EUTHA; mRNA, clone: RTFL01-38-E19
TrEMBLV4KCA70.0V4KCA7_EUTSA; Uncharacterized protein
STRINGBostr.24340s0006.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]