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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2392s0023.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 501aa MW: 55058.3 Da PI: 6.5796 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.6e-08 | 312 | 359 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Bostr.2392s0023.1.p 312 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 359 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.80E-9 | 306 | 363 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-16 | 306 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.37 | 308 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-16 | 308 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 312 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-10 | 314 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MDNELFMNTE FPPPPEMTAH FEPPSSSSAM MLNWALMDPN PPQDSSFLWE KSTEQQQQQS 60 IFDSALSSLV SSPTPSNSNF SGGCGGGGGD GFIIRELIGK LGNIGEIYGT TPISRSASCY 120 ATPMSSPPPP ANSNSQMMMN RTTPLTEFSA DPGFAERAAR FSCFGSRSFN GRTSSGLPIN 180 NSNNNIINNS GKLTRVSSTP ALKALVSPEG SPMIPAGEFS RKRKSLPKGK SKENPISTAS 240 PSPSFSKTAE KKEDWNGKGS KSSEEKGGKR RREEEDVEEE EGEGNKNNNT KPPEPPKDYI 300 HVRARRGQAT DSHSLAERVR REKIGERMKL LQDLVPGCNK VTGKALMLDE IINYVQSLQR 360 QVEFLSMKLS SVNDTRLDFN VDALVSKDVM IPSSNNRLHE EGLQSKSSSH HHQQLNNYNN 420 NNDSHLHPNI SSNNMMLQSP MNSLETCTLA RSFTHLPTLT HFTDSISQYQ MFSEEDLQSI 480 VGMGVAQNPN HESQHMKIEL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 224 | SRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00036 | PBM | Transfer from AT5G48560 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2392s0023.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488610 | 0.0 | AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | BT002945 | 0.0 | BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds. | |||
GenBank | BT005637 | 0.0 | BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871306.1 | 0.0 | transcription factor bHLH78 | ||||
Swissprot | Q9FJL4 | 0.0 | BH078_ARATH; Transcription factor bHLH78 | ||||
TrEMBL | D7MM36 | 0.0 | D7MM36_ARALL; Uncharacterized protein | ||||
STRING | Bostr.2392s0023.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2392s0023.1.p |
Publications ? help Back to Top | |||
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