PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0580.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 423aa MW: 47777.6 Da PI: 9.2121

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0580.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.8e-11	264	309	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+ +N++f Lr ++P+ K++K + L ++ YIk+L Bostr.23794s0580.1.p 264 NHVEAERQRRKILNQRFYALRAVVPNV-----SKMDKGSLLSDTITYIKEL 309 799*********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.8E-42	31	196	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	5.1E-16	259	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.91	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.69E-12	263	313	No hit	No description
Pfam	PF00010	1.1E-8	264	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-16	264	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-14	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MNQCNNAENS TMEGFMNFSG NLEMWPVETV QKRLQAVLDG THKDWTYAIY WQPSFDNSGD 60 TVLVWGDGFY KGQEDKRKTI SSPAEQEHWN KVIWKLNPED SDMIVTDIEW FYLKSMSGSF 120 ARGSGLVGHA FSTSTPVWVS GLDQIRRSGI ERAKEGGDFG MQTIACIPLA NGVVELGSTE 180 LIPPSSDLIN KIPILFNLKS FHSLSRDRVN VALRSSSSKV SSKSRKLENG CSNSTNNSFS 240 SEVPEKLLKT RGKKSSKGRE EPLNHVEAER QRRKILNQRF YALRAVVPNV SKMDKGSLLS 300 DTITYIKELK AKVDKAVFER NEIQIQLEEL KKERKVASSK EPVGMEIEVK IIECYAMIKV 360 KSSKQNHPEA RLMKALMDLE LEVDHASIVV VNDLMVQQAT VKMNFRIYTQ EQLRTMLISK 420 IN*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MNQCNNAENS TMEGFMNFSG NLEMWPVETV QKRLQAVLDG THKDWTYAIY WQPSFDNSGD  60
TVLVWGDGFY KGQEDKRKTI SSPAEQEHWN KVIWKLNPED SDMIVTDIEW FYLKSMSGSF  120
ARGSGLVGHA FSTSTPVWVS GLDQIRRSGI ERAKEGGDFG MQTIACIPLA NGVVELGSTE  180
LIPPSSDLIN KIPILFNLKS FHSLSRDRVN VALRSSSSKV SSKSRKLENG CSNSTNNSFS  240
SEVPEKLLKT RGKKSSKGRE EPLNHVEAER QRRKILNQRF YALRAVVPNV SKMDKGSLLS  300
DTITYIKELK AKVDKAVFER NEIQIQLEEL KKERKVASSK EPVGMEIEVK IIECYAMIKV  360
KSSKQNHPEA RLMKALMDLE LEVDHASIVV VNDLMVQQAT VKMNFRIYTQ EQLRTMLISK  420
IN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	5e-42	28	199	7	195	Transcription factor MYC3
4rqw_B	5e-42	28	199	7	195	Transcription factor MYC3
4rs9_A	5e-42	28	199	7	195	Transcription factor MYC3
4yz6_A	5e-42	28	199	7	195	Transcription factor MYC3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0580.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507550.1	0.0	PREDICTED: transcription factor MYC2-like
Swissprot	Q9LUK7	1e-114	BH028_ARATH; Transcription factor bHLH28
TrEMBL	R0HCK7	0.0	R0HCK7_9BRAS; Uncharacterized protein
STRING	Bostr.23794s0580.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21760	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	8e-76	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.23794s0580.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]