PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0343.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 179aa    MW: 20190.4 Da    PI: 10.245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0343.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00064769123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+++Fs+   L  H  +H
  Bostr.23794s0343.1.p 47 FECKTCNRRFSSFQALGGHRASH 69
                          89**********99999998887 PP
2zf-C2H216.52.4e-0594116123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg+sF +   L  H+r+H
  Bostr.23794s0343.1.p  94 HECSICGQSFGTGQALGGHMRRH 116
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-43571IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.82E-846116No hitNo description
PfamPF139123.0E-124671IPR007087Zinc finger, C2H2
SMARTSM003550.164769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3464774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.53394121IPR007087Zinc finger, C2H2
PfamPF139125.9E-1294118IPR007087Zinc finger, C2H2
SMARTSM003550.009794116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRERSDFEE SIKNLDIAKC LMILAQTSMV KQIGLNQHTE SHTSNRFECK TCNRRFSSFQ  60
ALGGHRASHK KPKLTVEQKD VKHLSNNFKG NHLHECSICG QSFGTGQALG GHMRRHRSSM  120
TVEPSFISPV IPTMPVLKRC SSSKRVLSLD LNLTPLENDL EYIFGKTFVP KIDMKFVV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0343.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058960.0AC005896.3 Arabidopsis thaliana chromosome 2 clone F3G5 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankX986720.0X98672.1 A.thaliana mRNA for ZAT11 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884875.11e-125zinc finger protein ZAT11
SwissprotQ9SLD41e-124ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLD7LJS81e-123D7LJS8_ARALL; Zinc finger family protein
STRINGBostr.23794s0343.1.p1e-130(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-126C2H2 family protein