PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0245.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 338aa    MW: 38439.7 Da    PI: 9.5487
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0245.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.1e-3248101255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Bostr.23794s0245.1.p  48 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 101
                           8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75944104IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2944102IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1446102IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2248103IPR006447Myb domain, plants
PfamPF002491.2E-949100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEGGGKTDRE EEEEDEGEGQ ESKVSSNSTV EESDKKTKVR PYVRSKVPRL RWTPDLHLRF  60
VRAVERLGGQ ERATPKLVRQ MMNIKGLSIA HVKSHLQMYR SKKIDDHGQA ISDHKHLFET  120
STDRNIYKLS QLPMFRGYNY NNDSPFRYGS KFSNASLWSS SSHETNRSLI DQIRPGLIRS  180
SSVSNNIRGS EYWTNNRSFQ NTYSSSVSNH LPKLRHNHHE QTNSVTFNSI QGHSRTLEKF  240
QIGVEESTNI HAYCNKTTGK RNTSTSIDLD LDLSLKLRQP EKTILEETET AATTTDQTLS  300
LSLCSGSSSW KKNRLMKIDE EDRTVKIGQA STLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1649103357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-1649103458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0245.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176890.0AK117689.1 Arabidopsis thaliana At2g38300 mRNA for unknown protein, complete cds, clone: RAFL17-35-G17.
GenBankBT0049730.0BT004973.1 Arabidopsis thaliana clone U50495 unknown protein (At2g38300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505450.10.0PREDICTED: two-component response regulator ARR18-like isoform X1
TrEMBLA0A178VYP60.0A0A178VYP6_ARATH; Uncharacterized protein
TrEMBLQ8GYE40.0Q8GYE4_ARATH; Myb-like HTH transcriptional regulator family protein
STRINGBostr.23794s0245.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-180G2-like family protein