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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0078.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 36545.3 Da PI: 8.631 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 53 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++ d l ++v + G+++W+ I+r ++ gR++k+c++rw + Bostr.23794s0078.1.p 53 KGPWSPKQDAALTRLVSKCGPRNWNFISRGIP-GRSGKSCRLRWCNQ 98 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.2e-16 | 105 | 148 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++++ eEd + a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Bostr.23794s0078.1.p 105 RKPFSDEEDHMIMSAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 148 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.617 | 48 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-29 | 50 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 52 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-14 | 53 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 54 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.42E-12 | 55 | 97 | No hit | No description |
PROSITE profile | PS51294 | 23.11 | 100 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 104 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 105 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.57E-10 | 107 | 150 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 107 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MNAAISQPPE LTPSVNLSTG FDGSEDAINA AVEAELAEVA KGDLNGGGRS KVKGPWSPKQ 60 DAALTRLVSK CGPRNWNFIS RGIPGRSGKS CRLRWCNQLD PCLKRKPFSD EEDHMIMSAH 120 AVHGNKWAVI AKLLPGRTDN AIKNHWNSSL RRKPANLWKN HQGMSKTEIY QMHPSKVRKI 180 SNASPKEHLP REEINSFTPP VLNDDKMDDE ANEPPQEQKS KPDVYRPVAR MGAFSEGHLV 240 QASRPNSLAG KFLQSLCYEP IIPSKCGRGC CNYPDNKTLS SSCNSVLGPE FVDYEEYSSA 300 ELDQELISIS TNLKNIAWIR SGINNKLNIV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-36 | 52 | 153 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0078.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505683.1 | 0.0 | PREDICTED: uncharacterized protein LOC104782447 | ||||
Swissprot | O04192 | 1e-162 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | R0HPT0 | 0.0 | R0HPT0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.23794s0078.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5638 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39880.1 | 1e-157 | myb domain protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0078.1.p |
Publications ? help Back to Top | |||
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