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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.22252s0379.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 23495.3 Da PI: 12.1949 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00012 | 155 | 188 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N + L +l+P + +K s iLe+A++YI+ L+ Bostr.22252s0379.1.p 155 NRKVRVLGRLVPGC-----GKQSVPVILEEATDYIQALE 188 55556677778777.....9****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-8 | 135 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.804 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-7 | 154 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MASLISDIEP PTSTTDLVRR KKRSSVYSFG ESHTRWRSEK QQRIYSAKLI QALQQVRLNS 60 SAAAVSFPTA QKRGKAVREA ADRALAVSAR GRTLWSRAIL ANRIKLKFRK QKRPRATTAI 120 PAMTTVVSSS NNSNRSRKRR VSVLRLNKKS IPAVNRKVRV LGRLVPGCGK QSVPVILEEA 180 TDYIQALEMQ VRAMNSLAEL LSSYSSVPPP I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | bHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.22252s0379.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC020580 | 0.0 | AC020580.11 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence. | |||
GenBank | AY081288 | 0.0 | AY081288.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds. | |||
GenBank | AY088744 | 0.0 | AY088744.1 Arabidopsis thaliana clone 9391 mRNA, complete sequence. | |||
GenBank | AY093390 | 0.0 | AY093390.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888482.1 | 1e-114 | transcription factor bHLH148 | ||||
Refseq | XP_020888484.1 | 1e-114 | transcription factor bHLH148 | ||||
Swissprot | Q9C8Z9 | 1e-103 | BH148_ARATH; Transcription factor bHLH148 | ||||
TrEMBL | D7L5J9 | 1e-112 | D7L5J9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.22252s0379.1.p | 1e-149 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6157 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06590.2 | 5e-98 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.22252s0379.1.p |
Publications ? help Back to Top | |||
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