PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0145.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 391aa    MW: 42418.9 Da    PI: 4.9325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0145.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-185398147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd  l ++v+++G+++W++Iar ++ gR++k+c++rw + 
  Bostr.22252s0145.1.p 53 KGPWSPEEDIVLSELVEKFGPRNWSLIARSIP-GRSGKSCRLRWCNQ 98
                          79******************************.***********985 PP
2Myb_DNA-binding50.84e-16105149147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r+++T+ Ed+ ++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Bostr.22252s0145.1.p 105 RNSFTEVEDQAIITAHAIHGNK-WAAIAKILP-GRTDNAIKNHWNST 149
                           789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.62948103IPR017930Myb domain
SuperFamilySSF466895.99E-3150146IPR009057Homeodomain-like
SMARTSM007178.8E-1652101IPR001005SANT/Myb domain
PfamPF002491.1E-175398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2554106IPR009057Homeodomain-like
CDDcd001673.42E-155597No hitNo description
PROSITE profilePS5129419.694104154IPR017930Myb domain
SMARTSM007173.9E-16104152IPR001005SANT/Myb domain
PfamPF002491.4E-14105149IPR001005SANT/Myb domain
CDDcd001672.11E-12107150No hitNo description
Gene3DG3DSA:1.10.10.608.3E-23107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEGEIERRSE TTGIREVESV AEVATGRGDG YGDGGEDAVG EGTSGRGGKD RVKGPWSPEE  60
DIVLSELVEK FGPRNWSLIA RSIPGRSGKS CRLRWCNQLD PSVKRNSFTE VEDQAIITAH  120
AIHGNKWAAI AKILPGRTDN AIKNHWNSTL RRRFMDLEKA KNIGTGSLVV EDPGIDRTTT  180
IASSEETLSS GGGGYVTTPI VSSEGKEATS MEMSEEQCVE KTNGEGISRQ DGNDPPTLFR  240
PVARLGSFNA YNHMEGSYSP HIQDQNQFQS SKQDTAMLRV LEGAYSEQFV PQTCGGGCCS  300
NNPVGIFQQD SLLGPDFVDY LDPPTFPSYE LAAIATDISS LAWLRSGLES SSVRVMEEAA  360
GRLRPQGSRG HRDHYLVSEQ GKNRTNVLST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-41471531107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0145.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5502950.0AY550295.1 Arabidopsis thaliana MYB transcription factor (At3g09230) mRNA, complete cds.
GenBankBT0264290.0BT026429.1 Arabidopsis thaliana At3g09230 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882609.10.0transcription factor MYB1
SwissprotQ425750.0MYB1_ARATH; Transcription factor MYB1
TrEMBLD7L7T00.0D7L7T0_ARALL; ATMYB1
STRINGBostr.22252s0145.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.10.0myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]