PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22157s0011.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 636aa    MW: 70777.4 Da    PI: 7.0927
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22157s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.22.6e-1302486281374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                           lv+lL+   ea++s++ +++++++ar  +lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e+ +al+++++v+
  Bostr.22157s0011.1.p 248 LVNLLTGSLEAIRSRNIAAINHFIARAGDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVT 336
                           5789999****************************99***********************************99*************** PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                           Pi+kf h+taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe++++pfe
  Bostr.22157s0011.1.p 337 PIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRTNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLPFE 421
                           *************************************************************....************************ PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f++ v++rled++l++L+vk+gE++aVn+v+q+h++l + +  +   +++L l++s++P  +v++eqea+hnse++ +r++++l+yysa
  Bostr.22157s0011.1.p 422 FHP-VVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAI--RDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSA 507
                           ***.7********************************88777777..99**************************************** PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrve 352
                           +fd+++++l+++s  r+k+E++l+grei+n+vaceg++r+erh  +++Wr++le+ GF+++ +se+++ q k+llr+++  ++g ++ve
  Bostr.22157s0011.1.p 508 MFDAIHTNLATDSLIRVKIEEMLFGREIRNIVACEGNHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGsgNEGfFSVE 596
                           ******************************************************************************98666778888 PP

                  GRAS 353 ee..........sgslvlgWkdrpLvsvSaWr 374
                            +           g ++l W+++pL+++SaW+
  Bostr.22157s0011.1.p 597 RSdedgegegagGGGVTLRWSEQPLYTISAWT 628
                           54667888888778888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.515222595IPR005202Transcription factor GRAS
PfamPF035149.1E-128248628IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSTRPLG  60
RSISLDNNNS SKPIERKASG CSLKQSIKLP PLATTRGNGE GFSWDNDNNN NRGKSLKRLA  120
EEDESRLSRA KRTKCENEGD EEKVCFVPSE VIYQPLPSNP NWVDSVITEL AGIGDKDVES  180
SRPAAVKEAS GSSTSASSET HSLSHRVAEP TNGSRNPYTH RGSAEERTSG NINNNNNHRN  240
DLQRDFELVN LLTGSLEAIR SRNIAAINHF IARAGDLASP RGRTPMTRLI AYYIEALALR  300
VARMWPHIFH IAPPREFDRT VEDESGNALR FLNQVTPIPK FIHFTANEML LRAFEGKERV  360
HIIDFDIKQG LQWPSFFQSL ASRTNPPHHV RITGIGESKL ELNETGDRLH GFAEAMNLPF  420
EFHPVVDRLE DVRLWMLHVK EGESVAVNCV MQMHKTLYDG TGAAIRDFLG LIRSTNPIAL  480
VLAEQEAEHN SEQLETRVCN SLKYYSAMFD AIHTNLATDS LIRVKIEEML FGREIRNIVA  540
CEGNHRQERH VGFRHWRRML EQLGFRSLGV SEREVLQSKM LLRMYGSGNE GFFSVERSDE  600
DGEGEGAGGG GVTLRWSEQP LYTISAWTIG GNGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6325762827378Protein SCARECROW
5b3h_D7e-6325762827378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22157s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418318.10.0PREDICTED: scarecrow-like protein 28
RefseqXP_020865601.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLD7KU230.0D7KU23_ARALL; Scarecrow transcription factor family protein
STRINGBostr.22157s0011.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein