PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2128s0103.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 297aa    MW: 32184.1 Da    PI: 6.8726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2128s0103.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00096196218123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+  Fs+   L  H+r+H
  Bostr.2128s0103.1.p 196 HECSICKAEFSSGQALGGHMRRH 218
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.6E-12121146IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-9121144No hitNo description
PROSITE profilePS5015710.45122149IPR007087Zinc finger, C2H2
SMARTSM003550.041122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-9191218No hitNo description
Gene3DG3DSA:3.30.160.605.7E-4193220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-12195220IPR007087Zinc finger, C2H2
SMARTSM003550.031196218IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328196223IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMNAAAVSS VYSGERSSLE AKEEEEEEEE  60
EVGEVEFQGA TDEDEDMANC LMLLSQGHQA KSSGDHLSMQ KMGFFSNKKP VASLGLGLDG  120
VYQCKTCDKS FHSFQALGGH RASHKKPKLG ASVFKCDEKK TTSVSAVETV EARAVGSYLS  180
LQVTSSDGSK KPEKTHECSI CKAEFSSGQA LGGHMRRHRG LTVNANATST IKTVISSSSS  240
HHHEESIRPK NILQLDLNLP APEDERCCEK PKFSFASKDQ ILLFAAASNS LIDCHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2128s0103.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1627510.0AL162751.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195971.10.0C2H2-type zinc finger family protein
TrEMBLA0A178U6H40.0A0A178U6H4_ARATH; Uncharacterized protein
TrEMBLQ9LZD50.0Q9LZD5_ARATH; C2H2-type zinc finger family protein
STRINGBostr.2128s0103.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.10.0C2H2 family protein