PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0120.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 29933.9 Da    PI: 9.8372
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.6e-313887150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  Bostr.20903s0120.1.p 38 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 87
                          79***********************************************8 PP
2K-box1163.6e-381092027100
                 K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                            s++ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++RskKnell+++ie++qk+e elq++n++Lr
  Bostr.20903s0120.1.p 109 PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNIKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHDNMYLR 197
                           45899************************************************************************************ PP

                 K-box  96 kklee 100
                           +k++e
  Bostr.20903s0120.1.p 198 AKIAE 202
                           **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-403089IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3893090IPR002100Transcription factor, MADS-box
CDDcd002652.52E-4331104No hitNo description
SuperFamilySSF554551.28E-3231102IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003286IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-323252IPR002100Transcription factor, MADS-box
PfamPF003193.6E-263986IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-325267IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-326788IPR002100Transcription factor, MADS-box
PfamPF014861.1E-27114200IPR002487Transcription factor, K-box
PROSITE profilePS5129715.395116206IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVMQKGKKGR EKESMEEGGS SHEADSSKKI GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK  60
AYELSVLCDA EVALVIFSTR GRLYEYANNS VKGTIERYKK ACSDAVNPPS VTEANTQYYQ  120
QEASKLRRQI RDIQNSNRHI VGESLGSLNI KELKNLEGRL EKGISRVRSK KNELLVAEIE  180
YMQKREMELQ HDNMYLRAKI AEGVRLNPDQ QESSVIQGTT VYKSGVSSHD QSQHYNRNYI  240
PVNLLEPNQQ FSAQDQPPLQ LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-203098169Myocyte-specific enhancer factor 2B
1tqe_Q4e-203098169Myocyte-specific enhancer factor 2B
1tqe_R4e-203098169Myocyte-specific enhancer factor 2B
1tqe_S4e-203098169Myocyte-specific enhancer factor 2B
5f28_A5e-203098169MEF2C
5f28_B5e-203098169MEF2C
5f28_C5e-203098169MEF2C
5f28_D5e-203098169MEF2C
6c9l_A4e-203098169Myocyte-specific enhancer factor 2B
6c9l_B4e-203098169Myocyte-specific enhancer factor 2B
6c9l_C4e-203098169Myocyte-specific enhancer factor 2B
6c9l_D4e-203098169Myocyte-specific enhancer factor 2B
6c9l_E4e-203098169Myocyte-specific enhancer factor 2B
6c9l_F4e-203098169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHAGL1A0.0M55550.1 Arabidopsis thaliana transcription factor (AGL1), complete cds.
GenBankAY0861960.0AY086196.1 Arabidopsis thaliana clone 22339 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001325710.11e-179K-box region and MADS-box transcription factor family protein
SwissprotP293811e-179AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A1I9LM271e-177A0A1I9LM27_ARATH; K-box region and MADS-box transcription factor family protein
STRINGBostr.20903s0120.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-169MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]