PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0042.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SBP
Protein Properties Length: 363aa    MW: 39943.2 Da    PI: 10.1189
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-4053130178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +CqvegC++dls+ak y++rhkvC +hsk+++v+vsgl+qrfCqqCsrfh+lsefD ekrsCrrrLa hnerrrk+q+
  Bostr.20903s0042.1.p  53 RCQVEGCKMDLSNAKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERRRKPQP 130
                           6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.4E-3247115IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.08651128IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-3752133IPR004333Transcription factor, SBP-box
PfamPF031103.4E-2954127IPR004333Transcription factor, SBP-box
PfamPF024662.7E-10301354IPR003397Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGSGQAESGG SSPTESSSLS GGLRFGQKIY FEDGSGSGSK NRVGTGHKST TARCQVEGCK  60
MDLSNAKAYY SRHKVCCIHS KSSKVIVSGL HQRFCQQCSR FHQLSEFDLE KRSCRRRLAC  120
HNERRRKPQP TTLFTSHYTR IAPSRYGNAN AAMLKTVLGD PTAWSTARSL MRRSGPCPVK  180
ESHQLMNVFS QESSSFTITC PEMMNNNSTD SSCALSLLSN SNSNPIQQHQ QQLQTKTNIW  240
RPPSGFDSMI VDRVTMAQPL PISSHHQYLN QTLEFMPGEN SNSHYMSPKD VPRVERNVAL  300
PGLIKTLKMM GSHGLTFAAI GGVFIGVEQL VQNFRAKRDV FNGAIGGFVA GASVLGYKGW  360
WF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28541271184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0042.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0965840.0KM096584.1 Cardamine hirsuta squamosa promoter-binding-like protein 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516431.11e-165PREDICTED: squamosa promoter-binding-like protein 15
SwissprotQ9M2Q61e-151SPL15_ARATH; Squamosa promoter-binding-like protein 15
TrEMBLR0HGL01e-161R0HGL0_9BRAS; Uncharacterized protein
STRINGBostr.20903s0042.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.11e-138squamosa promoter binding protein-like 15
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Morea EG, et al.
    Functional and evolutionary analyses of the miR156 and miR529 families in land plants.
    BMC Plant Biol., 2016. 16: p. 40
    [PMID:26841873]
  3. Hyun Y, et al.
    Multi-layered Regulation of SPL15 and Cooperation with SOC1 Integrate Endogenous Flowering Pathways at the Arabidopsis Shoot Meristem.
    Dev. Cell, 2016. 37(3): p. 254-66
    [PMID:27134142]
  4. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]