PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20505s0177.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 386aa    MW: 42392.6 Da    PI: 5.4899
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20505s0177.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-185095147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W+teEd  l ++v +lG+++W++Iar ++ gR++k+c++rw + 
  Bostr.20505s0177.1.p 50 KGPWSTEEDAVLTKLVSKLGPRNWSLIARGIP-GRSGKSCRLRWCNQ 95
                          79******************************.***********985 PP
2Myb_DNA-binding53.36.2e-17102146147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r++++ eEd  ++ a++ +G++ W+ Ia++++ gRt++ +k++w++ 
  Bostr.20505s0177.1.p 102 RKPFSDEEDRMIISAHAIHGNK-WAVIAKMLP-GRTDNAIKNHWNST 146
                           789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.47745100IPR017930Myb domain
SuperFamilySSF466896.47E-3147143IPR009057Homeodomain-like
SMARTSM007174.6E-154998IPR001005SANT/Myb domain
PfamPF002497.2E-175095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2551103IPR009057Homeodomain-like
CDDcd001675.38E-145294No hitNo description
PROSITE profilePS5129421.818101151IPR017930Myb domain
SMARTSM007173.3E-17101149IPR001005SANT/Myb domain
PfamPF002492.4E-15102146IPR001005SANT/Myb domain
CDDcd001675.17E-13104147No hitNo description
Gene3DG3DSA:1.10.10.601.2E-23104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEGETHQSEP LPLPSADSDE GISAAIEAEL AELAAGDSSG GGGGIKSKVK GPWSTEEDAV  60
LTKLVSKLGP RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFSDEED RMIISAHAIH  120
GNKWAVIAKM LPGRTDNAIK NHWNSTLRRK YSDLWKNGQW MANSVTSAYI KNENVDEISN  180
PSSKQQLPQG EINLPPKPPQ LSDVVMEDAD NEPQEQAPPI DSNVPIDSNV IRPVARVGAF  240
SVYNPTSQRN GYRDHNIVPC EGLLIQAAKP DSLAGKFLQS LYDEPHVPSK CGHGCSTNPA  300
ETKFSRNSVL GPEFVDYEEP CAVFNQELIS IATDLNNIAW IKSGLDNAVV REAEQSLKID  360
NFNYNDPRIK FTGMMPRQDF FCARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-39491503104C-Myb DNA-Binding Domain
1msf_C2e-39491503104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20505s0177.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2627340.0AF262734.2 Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA, complete cds.
GenBankAL1616670.0AL161667.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1I16.
GenBankAY1363250.0AY136325.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
GenBankBT0000920.0BT000092.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881975.10.0transcription factor MYB25
SwissprotO041921e-119MYB25_ARATH; Transcription factor MYB25
TrEMBLD7LV820.0D7LV82_ARALL; Uncharacterized protein
STRINGBostr.20505s0177.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]