PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.20505s0158.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 583aa MW: 64040.3 Da PI: 7.7445

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.20505s0158.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	256	276	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg Bostr.20505s0158.1.p 256 PCPEFRK-GSCPKGDSCEYAHG 276 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	7.62E-13	30	150	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.061	72	181	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.01	72	102	IPR002110	Ankyrin repeat
Pfam	PF13637	1.9E-7	73	126	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.7E-14	73	174	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.74E-13	74	153	No hit	No description
SMART	SM00248	0.65	107	139	IPR002110	Ankyrin repeat
SMART	SM00356	6.3E-5	251	277	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.976	251	278	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-6	256	277	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	256	276	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	283	315	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.812	286	310	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	43	286	309	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MCSGPKSNLC SSRTLAEIES RKKEEETMVL LEFAACDDLD SFKRDVEEKG LDLDEPGLWY 60 CRRVGSKKMG LEERTPLMVA AMYGSIKVLT FIVSTGKSDV NRACGKEGVT ALHCAVAGCS 120 VNMIEVIIVL VDASALVNSV DANGNQPLDV FVRVSRFVAS PRRKAVEMLL RGGGVGGLID 180 EAVEEEIKIV SKYPADASLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE 240 NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR 300 KVCFFAHKRE EMRPVNASTG SAVAQSPFGS LEMMLSLSPH AYSSGVSTPP VSPMANGVAS 360 SSPRNGGSWQ NRVNSLTPPA LQLNGGSRLK STSSARDIDM DMEMELRLRG FGNNVEETFG 420 PYVSSPSRNS QMGQNMNQHY PSSPVRQPPP HHGFDSSAAA AVAVIKARSS VFAKRSLSFK 480 PATQASPQSN LSDWGSPNGK LEWGMKGEEL NKMRRSVSFG IHGNNNNNNN VARDYRDEPD 540 VSWVNSLVKD SVVSERSFGV NERAWILSWA EQMYREKEQT VA*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MCSGPKSNLC SSRTLAEIES RKKEEETMVL LEFAACDDLD SFKRDVEEKG LDLDEPGLWY  60
CRRVGSKKMG LEERTPLMVA AMYGSIKVLT FIVSTGKSDV NRACGKEGVT ALHCAVAGCS  120
VNMIEVIIVL VDASALVNSV DANGNQPLDV FVRVSRFVAS PRRKAVEMLL RGGGVGGLID  180
EAVEEEIKIV SKYPADASLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE  240
NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR  300
KVCFFAHKRE EMRPVNASTG SAVAQSPFGS LEMMLSLSPH AYSSGVSTPP VSPMANGVAS  360
SSPRNGGSWQ NRVNSLTPPA LQLNGGSRLK STSSARDIDM DMEMELRLRG FGNNVEETFG  420
PYVSSPSRNS QMGQNMNQHY PSSPVRQPPP HHGFDSSAAA AVAVIKARSS VFAKRSLSFK  480
PATQASPQSN LSDWGSPNGK LEWGMKGEEL NKMRRSVSFG IHGNNNNNNN VARDYRDEPD  540
VSWVNSLVKD SVVSERSFGV NERAWILSWA EQMYREKEQT VA*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269\|PubMed:17609218}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.20505s0158.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress. {ECO:0000269\|PubMed:17609218}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226861	0.0	AK226861.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL08-18-O11.
GenBank	AL163832	0.0	AL163832.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19.
GenBank	AY056282	0.0	AY056282.1 Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds.
GenBank	BT008625	0.0	BT008625.1 Arabidopsis thaliana clone RAFL09-89-N11 (R19914) unknown protein (At3g55980) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020880437.1	0.0	zinc finger CCCH domain-containing protein 47
Swissprot	Q93ZS9	0.0	C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBL	A0A1I9LNJ4	0.0	A0A1I9LNJ4_ARATH; Salt-inducible zinc finger 1
STRING	Bostr.20505s0158.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM877	26	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55980.1	0.0	salt-inducible zinc finger 1

Link Out ? help Back to Top
Phytozome	Bostr.20505s0158.1.p

Publications ? help Back to Top
LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona. New Phytol., 2013. 200(4): p. 1225-33 [PMID:23914903] Liang Y,Gao Y,Jones AM Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization. Front Plant Sci, 2017. 8: p. 1015 [PMID:28659958]