PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20505s0075.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 232aa    MW: 26092.9 Da    PI: 7.5429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20505s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-105096354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+h+e+ErrRR+riNs +++Lr ll  +      K +Ka+ L k+v+ +k+L
  Bostr.20505s0075.1.p 50 RNHKEAERRRRERINSHLNKLRNLLSCN-----SKTDKAALLAKVVQRVKEL 96
                          58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5194796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-85096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1151106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1251102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-953102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.98E-5133204No hitNo description
Gene3DG3DSA:3.30.70.2604.4E-5133196No hitNo description
CDDcd048737.80E-5134200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQPEISDHIF YSFLTGRLCA SSTSTTTASS FYPFAIEDTI SQDKALVSLR NHKEAERRRR  60
ERINSHLNKL RNLLSCNSKT DKAALLAKVV QRVKELKQQT LEIIDETLPS ETDEISVLNF  120
EDCSNDDGRI IFKVSFCCED RPDLLQDLME TLKSLQMETL FADMTTVGGR SRNVIVVAAD  180
KEHHGIELVQ LLRNALKSLL ERSSKSVMMG HGGGGGERLK RRRALDHIIM V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20505s0075.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3909211e-167AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBankCP0026861e-167CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878108.11e-130putative transcription factor bHLH107
SwissprotQ9LET01e-124BH107_ARATH; Putative transcription factor bHLH107
TrEMBLD7LVJ61e-129D7LVJ6_ARALL; Basic helix-loop-helix family protein
STRINGBostr.20505s0075.1.p1e-169(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-124bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]