PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2021s0045.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 26152.9 Da PI: 9.5797 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.6 | 5.7e-12 | 117 | 158 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k + +W A I++ +++++lg+f + eeAa+++++a+ Bostr.2021s0045.1.p 117 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 158 79**96.5.7*********6.....6********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.717 | 94 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-6 | 116 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-7 | 116 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-9 | 117 | 161 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.59E-12 | 118 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-8 | 118 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVSLRRRRLL GLCCGPNGYV TQLPFLTAEE MITGIPNPNA RAAYNPGPAE TVKPAIEEIM 60 PIEEGSRRTR SKHMQFRSDY SDMSPVDSDS ISPKYQPLKR RKQHRRKQVH NQEPCLMRGV 120 YYKNMKWQAA IKVEKRQIHL GTFSSQEEAA RLYDRAAFMC GREPNFALSE EDKRELKQQS 180 WVEFLACTRR TITNKKPKRR IEHEDKVINA SMLRCPPEEE EEQE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2021s0045.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221624 | 0.0 | AK221624.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-D09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450270.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
Swissprot | Q56XP9 | 1e-120 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | F4JS76 | 1e-117 | F4JS76_ARATH; Integrase-type DNA-binding superfamily protein | ||||
STRING | Bostr.2021s0045.1.p | 1e-168 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6189 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-120 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2021s0045.1.p |