PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.20129s0232.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MIKC_MADS

Protein Properties

Length: 312aa MW: 35414.6 Da PI: 4.7507

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.20129s0232.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.8	5e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l +s Bostr.20129s0232.2.p 9 KRIENKTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSNRLSLFS 58 79*******************************************98776 PP
2	K-box	20	2.8e-08	101	169	7	75
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 +++ +++ e+l++e+ kL++++++ ++e+R++ + + +++e + e+qL + l+++ ++++++l + Bostr.20129s0232.2.p 101 TAAINSDVEELEHEIYKLQQQLQMAEEELRKYEPDPIRFTTMEEYETCEKQLTDTLTRVGQRREHILND 169 446678899******************************************************999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.156	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.76E-34	2	58	No hit	No description
SuperFamily	SSF55455	3.92E-26	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.7E-25	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGRVKLEIKR IENKTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SNRLSLFSGK 60 TSALVFPDQS PRPDFQSKEY LLRTLQQLKT ENDIALQLTN TAAINSDVEE LEHEIYKLQQ 120 QLQMAEEELR KYEPDPIRFT TMEEYETCEK QLTDTLTRVG QRREHILNDL SSYEASAIQQ 180 QNMDGPFVND VVGGWLAENG PTQAHLFDAS AHSAMYETLL QGSSSSSNQN NIMGESNVSN 240 HNGDMFQEWA QAYNSTTAHN PSTLFPPMLQ QQHGQVVSNV EEIEIPVMKK EAQADHEVSD 300 YDIRMPQLSS H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
1tqe_R	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
1tqe_S	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6byy_A	5e-17	1	54	1	54	MEF2 CHIMERA
6byy_B	5e-17	1	54	1	54	MEF2 CHIMERA
6byy_C	5e-17	1	54	1	54	MEF2 CHIMERA
6byy_D	5e-17	1	54	1	54	MEF2 CHIMERA
6bz1_A	5e-17	1	54	1	54	MEF2 CHIMERA
6bz1_B	5e-17	1	54	1	54	MEF2 CHIMERA
6bz1_C	5e-17	1	54	1	54	MEF2 CHIMERA
6bz1_D	5e-17	1	54	1	54	MEF2 CHIMERA
6c9l_A	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_B	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_C	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_D	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_E	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_F	4e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.20129s0232.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB094111	0.0	AB094111.1 Arabidopsis thaliana At1g77980 mRNA for MADS-box protein, partial cds.
GenBank	AY141242	0.0	AY141242.1 Arabidopsis thaliana MADS-box protein AGL66 mRNA, complete cds.
GenBank	DQ446441	0.0	DQ446441.1 Arabidopsis thaliana clone pENTR221-At1g77980 MADS-box family protein (At1g77980) mRNA, complete cds.
GenBank	DQ652940	0.0	DQ652940.1 Arabidopsis thaliana clone 0000013056_0000009401 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301191.1	0.0	agamous-like MADS-box protein AGL66
Swissprot	Q1PFC2	0.0	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	R0HW85	0.0	R0HW85_9BRAS; Uncharacterized protein
STRING	Bostr.20129s0232.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	0.0	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Bostr.20129s0232.2.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]