PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0232.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 330aa    MW: 37693 Da    PI: 4.6777
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0232.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.4e-27958150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          krienk+nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l  +s
  Bostr.20129s0232.1.p  9 KRIENKTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSNRLSLFS 58
                          79*******************************************98776 PP
2K-box19.93.1e-08119187775
                 K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                           +++ +++ e+l++e+ kL++++++ ++e+R++  + +   +++e +  e+qL + l+++ ++++++l +
  Bostr.20129s0232.1.p 119 TAAINSDVEELEHEIYKLQQQLQMAEEELRKYEPDPIRFTTMEEYETCEKQLTDTLTRVGQRREHILND 187
                           446678899******************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.156161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-29280IPR002100Transcription factor, MADS-box
CDDcd002656.60E-36275No hitNo description
PRINTSPR004045.2E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.2E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRVKLEIKR IENKTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SNRLSLFSGK  60
TRIEDVFSRY INLSDQEREN ALVFPDQSPR PDFQSKEYLL RTLQQLKTEN DIALQLTNTA  120
AINSDVEELE HEIYKLQQQL QMAEEELRKY EPDPIRFTTM EEYETCEKQL TDTLTRVGQR  180
REHILNDLSS YEASAIQQQN MDGPFVNDVV GGWLAENGPT QAHLFDASAH SAMYETLLQG  240
SSSSSNQNNI MGESNVSNHN GDMFQEWAQA YNSTTAHNPS TLFPPMLQQQ HGQVVSNVEE  300
IEIPVMKKEA QADHEVSDYD IRMPQLSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-18190191MEF2 CHIMERA
6bz1_B9e-18190191MEF2 CHIMERA
6bz1_C9e-18190191MEF2 CHIMERA
6bz1_D9e-18190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0232.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464410.0DQ446441.1 Arabidopsis thaliana clone pENTR221-At1g77980 MADS-box family protein (At1g77980) mRNA, complete cds.
GenBankDQ6529400.0DQ652940.1 Arabidopsis thaliana clone 0000013056_0000009401 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889797.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC20.0AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLD7KV610.0D7KV61_ARALL; MADS-box family protein
STRINGBostr.20129s0232.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.10.0AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]