PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.20129s0070.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 732aa MW: 84959.4 Da PI: 7.7292

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.20129s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84	2.4e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++ +eHnHel p Bostr.20129s0070.1.p 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFIKEHNHELLP 97 9**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-24	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-26	212	304	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	490	526	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-9	491	524	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	501	528	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRPDG KWYVYSFIKE HNHELLPEQA HFFRSHRNTE PVKSNDARLR 120 RKKNSPLTDC KHLSAYYDLD FIDGYMRNQH DKGRRLVLDN GDAQILLEFL MRMQEENPKF 180 FFAVDFSEDH LLRNVFWVDA KGIEDYKSFS DVVSFDTTYF VSKYKIPLVL FIGVNHHVQP 240 VLLGCGLVAD DTVYTYVWLM QSWLVAMGGQ KPKVMLTDQN NSIKAAIAAV LTETRHCYCL 300 WHVLDRLPRN LDYWSMWQDT FMKKLFKCIY RSWSEEEFDR RWLKLIDKFH LRDVQWMRSL 360 YEERKFWAPT FMRGVTFAGL STRYRSENVN SLFDRYVQAE TSLKDFLEGY GLMLKDRYEE 420 EAKADFDAWH EVPELKSPSP FEKQMLLVYT HEIFRKFQLE VLGAAACHLT KESEEGTTYS 480 VKDFDDDQKY LVDWNEFKSD IYCSCRSFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT 540 NAARNRHQIS GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDIAMFA MKEAFKQCAI 600 KFNTIEHPAR CEEAAIQAGD PVQEGNQYGS TLKQNGLEPN IHAGNAPGQA ETRREKRSCL 660 HNTSKKSKHM AQSETVGEGS QEGFQQMAAP RSLQAVAGQF HNTMPGVFQN VIPTEFHNLP 720 AANMHQNNPP G*

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRPDG KWYVYSFIKE HNHELLPEQA HFFRSHRNTE PVKSNDARLR  120
RKKNSPLTDC KHLSAYYDLD FIDGYMRNQH DKGRRLVLDN GDAQILLEFL MRMQEENPKF  180
FFAVDFSEDH LLRNVFWVDA KGIEDYKSFS DVVSFDTTYF VSKYKIPLVL FIGVNHHVQP  240
VLLGCGLVAD DTVYTYVWLM QSWLVAMGGQ KPKVMLTDQN NSIKAAIAAV LTETRHCYCL  300
WHVLDRLPRN LDYWSMWQDT FMKKLFKCIY RSWSEEEFDR RWLKLIDKFH LRDVQWMRSL  360
YEERKFWAPT FMRGVTFAGL STRYRSENVN SLFDRYVQAE TSLKDFLEGY GLMLKDRYEE  420
EAKADFDAWH EVPELKSPSP FEKQMLLVYT HEIFRKFQLE VLGAAACHLT KESEEGTTYS  480
VKDFDDDQKY LVDWNEFKSD IYCSCRSFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT  540
NAARNRHQIS GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDIAMFA MKEAFKQCAI  600
KFNTIEHPAR CEEAAIQAGD PVQEGNQYGS TLKQNGLEPN IHAGNAPGQA ETRREKRSCL  660
HNTSKKSKHM AQSETVGEGS QEGFQQMAAP RSLQAVAGQF HNTMPGVFQN VIPTEFHNLP  720
AANMHQNNPP G*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.20129s0070.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221406	0.0	AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBank	BT010456	0.0	BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416546.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Refseq	XP_010471782.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4, partial
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A178WNR6	0.0	A0A178WNR6_ARATH; FRS4
STRING	Bostr.20129s0070.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Bostr.20129s0070.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]