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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.20129s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C2H2 | ||||||||
Protein Properties | Length: 468aa MW: 50472.2 Da PI: 9.6309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 208 | 230 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Bostr.20129s0005.1.p 208 ACSQCGEVFPKLESLELHQAVrH 230 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.808 | 207 | 235 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 230 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 3.36E-24 | 232 | 463 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.1E-16 | 234 | 463 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MALLTFLPEN AEPPQKHNLP SSKRKKRESP TDQTQPQKQK PHKPQKPKKA VLPKQPSSWD 60 QIKNLLTCKQ IEGSRVHDPS KNSQSGPSIT TNLSPSKLGS SCSSICSFRD VAHGNTRVVH 120 RADHSPDVAN SAAPDSETRL LTRKPGQHGS SSSRSLTSGS TRSNASGSYT SSSTTSFRAM 180 QFRKLSGCYE CHMIVDPSRY PISPRVCACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS 240 GRNIVEIIFK SSWLKKDSPI CQIERILKVH NTQRTIQRFE DCRDAVKARA LQTTRKDARC 300 AADGNELLRF HCTTLTCSLG ARGSSSLCSN LPGCGVCTVI RHGFQGKSCG GGATATAKGG 360 GVRTTASSGR ADDLLRCSDD ARRVMLVCRV IAGRVKRIDL PAAEAPVTTE KKSPVEENSA 420 VGVSSSGGVF DSVAVNAGVY SNLEELVVYN PRAILPCFVV IYKVLES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.20129s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352975 | 0.0 | AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428604.1 | 0.0 | PREDICTED: uncharacterized protein LOC104713223 | ||||
TrEMBL | D7KT60 | 0.0 | D7KT60_ARALL; Zinc finger family protein | ||||
STRING | Bostr.20129s0005.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1916 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.20129s0005.1.p |