|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Bostr.19427s0033.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
Family |
MIKC_MADS |
Protein Properties |
Length: 228aa MW: 26343.8 Da PI: 9.295 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.19427s0033.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 82.5 | 2.7e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+i++++ rqvtfskRr+g++KKA+EL +LCdae+++iifs+t+kly+++s
Bostr.19427s0033.1.p 10 KIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEICLIIFSNTDKLYDFAS 59
79**********************************************86 PP
|
2 | K-box | 76.3 | 8.1e-26 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+ +++ + +q+e++ L++e+++Lq+++R+l Ge+L+ L keL++Le+qLe sl+ iR kK+++l+++i+el++k + ++++ +L++k
Bostr.19427s0033.1.p 81 NPASEVKFWQREAETLRQELHSLQENHRQLTGEQLNGLGAKELHNLESQLEMSLRGIRMKKEQILTNEIKELRRKWNLVDHDYLELSRK 169
567889**********************************************************************9999999999999 PP
K-box 98 le 99
++
Bostr.19427s0033.1.p 170 VQ 171
86 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 29.857 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.23E-38 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 5.23E-31 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-22 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.072 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEICLIIFSN TDKLYDFASS 60 SVKSTIERYN KTKMEQQQLL NPASEVKFWQ REAETLRQEL HSLQENHRQL TGEQLNGLGA 120 KELHNLESQL EMSLRGIRMK KEQILTNEIK ELRRKWNLVD HDYLELSRKV QRIHQENVEL 180 YKKAYATSNT NGLGHHELVD AADDSHAQVR LQLSQPEQSH YETSSKS*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AB493558 | 0.0 | AB493558.1 Arabidopsis thaliana At2g22630 mRNA for hypothetical protein, partial cds, clone: RAAt2g22630. |