PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s1061.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 279aa    MW: 31254.1 Da    PI: 6.8041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s1061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-074793347
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                          +WT+eE + + +a + +  +   +W ++a++++ g+t  ++ + + k+
  Bostr.19424s1061.1.p 47 SWTKEENKMFERALAIYAEDspdRWFKVASMIP-GKTVFDVMNQYSKL 93
                          7*****************99*************.********999875 PP
2Myb_DNA-binding39.81.1e-12143187347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Bostr.19424s1061.1.p 143 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 187
                           8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.6664396IPR017884SANT domain
SMARTSM007172.5E-84496IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-44692IPR009057Homeodomain-like
SuperFamilySSF466899.33E-1246100IPR009057Homeodomain-like
PfamPF002492.0E-64792IPR001005SANT/Myb domain
CDDcd001671.46E-74893No hitNo description
PROSITE profilePS5129419.439136192IPR017930Myb domain
SuperFamilySSF466892.73E-15138191IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17139191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.9E-11140192IPR009057Homeodomain-like
SMARTSM007171.7E-10140190IPR001005SANT/Myb domain
CDDcd001674.98E-9143187No hitNo description
PfamPF002494.6E-10143187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MLQISYPNQV LDSFAMETLH PLSHLPISDH RFIVQEMMSL HSSSSSSWTK EENKMFERAL  60
AIYAEDSPDR WFKVASMIPG KTVFDVMNQY SKLEEDVSDI EAGRVPIPGY PAASSPLAFD  120
PDTCRKRPNG PRGSDHDRKK GVPWTEEEHR RFLLGLLKYG KGDWRNISRN FVVSKTPTQV  180
ASHAQKYYQR QLSGAKDKRR PSIHDITTVN LLNANLNRSF SDHSDILPDL GFIDKDNAEE  240
GVIFMGQNLS SETLFSPSPT SFDAAINFAG ANAFSARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1638125188RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s1061.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486776.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H72e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7L9W11e-178D7L9W1_ARALL; Myb family transcription factor
STRINGBostr.19424s1061.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-178MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]