PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0860.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 813aa    MW: 92241.3 Da    PI: 5.5304
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0860.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-08457501246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g+WT+ Ed+ l++ +++    +W  Ia  +g++Rt+ qc  r+q 
  Bostr.19424s0860.1.p 457 GPWTAAEDKNLLRIIEKKSLTDWVDIAVSLGTNRTPFQCLARYQR 501
                           89*****************************************96 PP
2Myb_DNA-binding41.23.7e-13509553146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r+ WT eEd++l  av+++G ++W ++a+ +  gR + qc +rw k
  Bostr.19424s0860.1.p 509 RKEWTVEEDDQLRAAVELFGDKDWQSVANVLK-GRAGTQCSNRWKK 553
                           789****************************9.***********98 PP
3Myb_DNA-binding53.36.5e-17560605147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw + 
  Bostr.19424s0860.1.p 560 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 605
                           79******************************.***********986 PP
4Myb_DNA-binding49.69.4e-16612656147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+WT+eEde+l +a++++G   W+++a+++   Rt++qc  rw ++
  Bostr.19424s0860.1.p 612 RGKWTEEEDEKLREAIAEHGYS-WSKVASHLA-FRTDNQCLRRWKTL 656
                           89******************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.879357450IPR017877Myb-like domain
SMARTSM0071717361452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-6364380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-6426457IPR009057Homeodomain-like
SuperFamilySSF466895.31E-13434500IPR009057Homeodomain-like
PROSITE profilePS500908.804451503IPR017877Myb-like domain
SMARTSM007174.6E-8455505IPR001005SANT/Myb domain
PfamPF002493.2E-7457501IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-11458511IPR009057Homeodomain-like
SuperFamilySSF466897.59E-19488558IPR009057Homeodomain-like
PROSITE profilePS5129420.766504559IPR017930Myb domain
SMARTSM007178.2E-13508557IPR001005SANT/Myb domain
PfamPF002493.8E-12509553IPR001005SANT/Myb domain
CDDcd001672.12E-10511555No hitNo description
Gene3DG3DSA:1.10.10.601.5E-15512557IPR009057Homeodomain-like
SuperFamilySSF466893.36E-10559602IPR009057Homeodomain-like
SMARTSM007175.2E-14559608IPR001005SANT/Myb domain
PROSITE profilePS5129413.459560606IPR017930Myb domain
PfamPF002495.1E-15560605IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-21561612IPR009057Homeodomain-like
CDDcd001675.54E-11562604No hitNo description
SuperFamilySSF466892.25E-25588661IPR009057Homeodomain-like
PROSITE profilePS5129426.328607661IPR017930Myb domain
SMARTSM007171.1E-15611659IPR001005SANT/Myb domain
PfamPF002496.3E-15612656IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20613656IPR009057Homeodomain-like
CDDcd001671.20E-12614656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MNRNSLYEAY GDDDDDEEDD IVEDLEDLRR ACMVSDVNSD KFTAKTNSIE ADGGCGGEMP  60
SDSENEDDFE MLRTIKSQLA SSKDADLSGG PPMDLSLPSD SESEDDFEMI RSIKSQLALS  120
MDVSLPPIGL SDDDEDDAFE TLRAIRRRFS AYKNFDSEGN FMNDSPGKKK QVHDSDNEPS  180
REILSRSNTC ESFPDHGKSV VTVPDSEDVQ DGHSVDVHEK TSIEPLDHLE TCQLSLMPAA  240
SSSFPEAAQA FVDAIRRNRA YQKFLRRKLE VIEATIEQNE KHKKNVKIVK DFQASCKRIT  300
KLALSQRKDP RVELISTRKS VPCDSSEGND KKTSPLMLGP PENPCVANYR MALEKYPVSV  360
ERRNWSTEEN KNLAKGLKQE VQKILLSEAI ERSSDLEGST YDIDTINESI GNLEITPEMI  420
RQFLPKINWD SLDIKDRSAA ECEARWMSSE DPLINHGPWT AAEDKNLLRI IEKKSLTDWV  480
DIAVSLGTNR TPFQCLARYQ RSLNASILRK EWTVEEDDQL RAAVELFGDK DWQSVANVLK  540
GRAGTQCSNR WKKSLRPTRK GRWSLEEDKR VKVAVTLFGS QNWHKISQFV PGRTATQCRE  600
RWVNCLEPKI NRGKWTEEED EKLREAIAEH GYSWSKVASH LAFRTDNQCL RRWKTLYPHQ  660
VALLQEARRL QKEAIVGNFV DRESERPAHV TGTILALPEI SLEPEPDSVA LKKKRKAKRK  720
KSDAERQPKR RRKGLEKCSG DVSRQENETV CENEPNNGGE ERLLDWNGIT RNKDEGANVL  780
QKHQTTPLVL KKLTPRRKVS AVVPIKNQDA PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-294186539159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-294186539159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713731KRKAKRKKSDAERQPKRRR
2718732RKKSDAERQPKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0860.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506400.10.0PREDICTED: snRNA-activating protein complex subunit 4-like isoform X2
TrEMBLR0G3G90.0R0G3G9_9BRAS; Uncharacterized protein
STRINGBostr.19424s0860.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1