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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0807.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | TCP | ||||||||
Protein Properties | Length: 428aa MW: 48746.4 Da PI: 7.0095 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.4 | 1.7e-40 | 145 | 310 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssa 70 + ++drhski T+ g RdRR+Rls+++a++fF Lqd+LGfdk+skt+eWLl+qakp+i+++++t s +++ Bostr.19424s0807.1.p 145 PSRTDRHSKIKTANGTRDRRMRLSLDVAKEFFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTfshqcgfssgdeshtrpalgSMDTS 233 5799************************************************************9888888887777666666633333 PP TCP 71 seceaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 s+ + +s +++ +s+ + ++ k+k+++ ++ +l+k++rakar+ra++rt km++k ++ Bostr.19424s0807.1.p 234 SDLCDLASMLTVDDRGSNtnttetrgnkvDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMVKMMMKGRS 310 333222222222222222445566777876666666888888888888*************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.8E-42 | 146 | 307 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.655 | 147 | 205 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.604 | 286 | 303 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MNNNTFSTTT TVYDDYMLFP YNDHYSSQPV LSFGPSSSIN DILIHSTSNT SNNHLDHHHH 60 QFLQPSPFSQ FEFVPDCALL ASFLPQNNGH DDNQTIANDN RHPSLLLHLN NGDQPTEPSE 120 TITHIEDSQT ISTSQDPKMK KAKKPSRTDR HSKIKTANGT RDRRMRLSLD VAKEFFGLQD 180 MLGFDKASKT VEWLLTQAKP EIIKIAKTFS HQCGFSSGDE SHTRPALGSM DTSSDLCDLA 240 SMLTVDDRGS NTNTTETRGN KVDGRSMRGK RKRPEPRTPI LKKLSKDERA KARERAKDRT 300 MVKMMMKGRS QLVKVVEEEV HDQGEIVKND ISEVNRSSFE VTHCQEEIEE LCKNDRFAVC 360 NDFVMNKKDH ISNESYDIIN KLNSSFPMIN HHRSQGEANS IEQHQFTDLH HFLAKPKDLM 420 YNYQNMC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0807.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF062581 | 0.0 | EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642531.1 | 0.0 | transcription factor TCP18 isoform X1 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | R0G522 | 0.0 | R0G522_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.19424s0807.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 0.0 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0807.1.p |