PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 390aa MW: 44274.8 Da PI: 9.9947

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0797.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.3	4.2e-23	35	82	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + ++s + +++++Rr++++KKA+ELS+LC++ev+vi ++s+g+l++++ Bostr.19424s0797.1.p 35 SASSSSKATSLIRRRKTVFKKAHELSILCGIEVCVICYGSDGELKTWP 82 56889999***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-8	14	84	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.559	37	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-15	37	81	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-17	38	113	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.23E-19	45	109	No hit	No description
PRINTS	PR00404	1.6E-5	47	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-5	62	83	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MVSSSSCYPS SSSSTKKKTT NFSQIQQTLF KKPNSASSSS KATSLIRRRK TVFKKAHELS 60 ILCGIEVCVI CYGSDGELKT WPGDREKVKA MARRYGALSE TKRRKRSVAF HEFLEMVNKD 120 DSKKKKKNKV RRVSKVKYPV WDPRFDNYSV EQLTGLIQSL ERNLTRIQHR IHAVVEGQGQ 180 RKIQYRNMGN QELMMTTTMN HLQQQSNQVS MFLFNHGNGN ISQIPVSVSA LNQGQYLAPI 240 PPELMIYPNS DVGNYSGSLG NMNMLTCDNI NNINDFSKQI EQNSRVESYS SLLGAHRYGI 300 NEFENTNMYT RNNFNVEDYS GLLGVKGTAT NEFQSMNMYD YNNNNNSVNA NGLSHQLVQF 360 PTKQQYRAFN SDQSGNNIWS LYDLSQSLL*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MVSSSSCYPS SSSSTKKKTT NFSQIQQTLF KKPNSASSSS KATSLIRRRK TVFKKAHELS  60
ILCGIEVCVI CYGSDGELKT WPGDREKVKA MARRYGALSE TKRRKRSVAF HEFLEMVNKD  120
DSKKKKKNKV RRVSKVKYPV WDPRFDNYSV EQLTGLIQSL ERNLTRIQHR IHAVVEGQGQ  180
RKIQYRNMGN QELMMTTTMN HLQQQSNQVS MFLFNHGNGN ISQIPVSVSA LNQGQYLAPI  240
PPELMIYPNS DVGNYSGSLG NMNMLTCDNI NNINDFSKQI EQNSRVESYS SLLGAHRYGI  300
NEFENTNMYT RNNFNVEDYS GLLGVKGTAT NEFQSMNMYD YNNNNNSVNA NGLSHQLVQF  360
PTKQQYRAFN SDQSGNNIWS LYDLSQSLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	125	RKRSVAFHEFLEMVNKDDSKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0797.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026654	0.0	AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11.
GenBank	BT029549	0.0	BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_188495.1	0.0	AGAMOUS-like 103
Swissprot	Q9LSB2	0.0	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A178V6E8	1e-178	A0A178V6E8_ARATH; AGL103
STRING	Bostr.19424s0797.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-160	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	Bostr.19424s0797.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]