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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.19424s0797.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
M-type_MADS |
Protein Properties |
Length: 390aa MW: 44274.8 Da PI: 9.9947 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.19424s0797.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 72.3 | 4.2e-23 | 35 | 82 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+ ++s + +++++Rr++++KKA+ELS+LC++ev+vi ++s+g+l++++
Bostr.19424s0797.1.p 35 SASSSSKATSLIRRRKTVFKKAHELSILCGIEVCVICYGSDGELKTWP 82
56889999***************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MVSSSSCYPS SSSSTKKKTT NFSQIQQTLF KKPNSASSSS KATSLIRRRK TVFKKAHELS 60 ILCGIEVCVI CYGSDGELKT WPGDREKVKA MARRYGALSE TKRRKRSVAF HEFLEMVNKD 120 DSKKKKKNKV RRVSKVKYPV WDPRFDNYSV EQLTGLIQSL ERNLTRIQHR IHAVVEGQGQ 180 RKIQYRNMGN QELMMTTTMN HLQQQSNQVS MFLFNHGNGN ISQIPVSVSA LNQGQYLAPI 240 PPELMIYPNS DVGNYSGSLG NMNMLTCDNI NNINDFSKQI EQNSRVESYS SLLGAHRYGI 300 NEFENTNMYT RNNFNVEDYS GLLGVKGTAT NEFQSMNMYD YNNNNNSVNA NGLSHQLVQF 360 PTKQQYRAFN SDQSGNNIWS LYDLSQSLL*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 103 | 125 | RKRSVAFHEFLEMVNKDDSKKKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB026654 | 0.0 | AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11. |
GenBank | BT029549 | 0.0 | BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |