PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 293aa MW: 32926.2 Da PI: 6.7093

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0450.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	181	220	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RR++i +++ L +l+P+ +Kls a+iLe+ +YIk Lq Bostr.19424s0450.1.p 181 NRRKKISNKIRSLEKLMPWE-----RKLSLAMILEESHKYIKFLQ 220 7****************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.725	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0032	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	181	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.97E-6	181	224	No hit	No description
SuperFamily	SSF47459	7.59E-9	181	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-9	183	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEISAYEFDS LTELPPLPQE YKPMEYSRSS LSSLESLPPF PPSDFTPSAF TFSDHHDLDL 60 SLSPPDSLVL DSPLSLLNRH HLAESTRLEQ LFYESTHFDQ LFHNDDVTTT TTTPFFHLPD 120 LKSFEQTTAV EEPTTMKLVP SLSPPLPVAK RHKKLHSSSS STTSGSPRAS SSHHTNDGGL 180 NRRKKISNKI RSLEKLMPWE RKLSLAMILE ESHKYIKFLQ SQLASLRWMP LESVYNTAGE 240 VGESDLLKSL TRQQILQVLA NSPGSRNVLS THGVCVFSYE QLLTLKTMSR NL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0450.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488223.1	1e-130	PREDICTED: transcription factor bHLH117-like
Swissprot	Q9LRJ4	1e-120	BH117_ARATH; Transcription factor bHLH117
TrEMBL	R0GAQ1	1e-125	R0GAQ1_9BRAS; Uncharacterized protein
STRING	Bostr.19424s0450.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	1e-102	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0450.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]