PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

CPP

Protein Properties

Length: 635aa MW: 69257.8 Da PI: 6.5934

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0383.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.5	4e-16	346	384	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk+ Bostr.19424s0383.1.p 346 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKR 384 589**********************************97 PP
2	TCR	51.2	2.5e-16	431	469	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Bostr.19424s0383.1.p 431 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 469 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.5E-18	345	386	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.337	346	471	IPR005172	CRC domain
Pfam	PF03638	1.4E-11	348	383	IPR005172	CRC domain
SMART	SM01114	3.7E-17	431	472	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.8E-12	433	469	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MRDCLFLENM DTPQKSITQI GTPVSKLKVE DSPVFNYICS LSPIKSIKSI PIAQTLSSLN 60 FTSPPSVFTS PHAVSHNESR FRNQINSSDP SKDGVASNEV ASIGEQGEEE ALIEIESSQI 120 LKNDCNTPRV IIDAGDNGCC EDGGMDLQKM CDNVKAKSDT PDWETLISGS AELIYGSSSE 180 SEAFSCLLKR TSNSEARVHG GTMSTLEPVS NTYVANNESE SFDALSIRRC LDFAIPGNNQ 240 QTLGESSSSC VVPSIGLHLN AITMSSKDNN VANEYSFSGN IKDGLQSSTT PVLHLEHDIV 300 RENEIGKDAS QAVEEFPKSS ALKELNPISP KKKRRKSEQS GEGELSCKRC NCKKSKCLKL 360 YCECFAAGVY CIEPCSCIDC FNKRIHEDVV LATRKQIESR NPLAFAPKVI RSSDSIIEVG 420 DDTSKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSSFEQ 480 DEENEISGKS ETAKTQQNVE LFNPAAPPST PIPVRQALAQ LPISSNNRLI PPVSHFHHGV 540 FGSSSSGIYN IRKPEMSMLS HSRIETITED VDDMPENHLI QSPITNMKAV VSPNSKRVSL 600 PHLDSSESTP WRRNGGGRKL ILSIPTFPSL THHR*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MRDCLFLENM DTPQKSITQI GTPVSKLKVE DSPVFNYICS LSPIKSIKSI PIAQTLSSLN  60
FTSPPSVFTS PHAVSHNESR FRNQINSSDP SKDGVASNEV ASIGEQGEEE ALIEIESSQI  120
LKNDCNTPRV IIDAGDNGCC EDGGMDLQKM CDNVKAKSDT PDWETLISGS AELIYGSSSE  180
SEAFSCLLKR TSNSEARVHG GTMSTLEPVS NTYVANNESE SFDALSIRRC LDFAIPGNNQ  240
QTLGESSSSC VVPSIGLHLN AITMSSKDNN VANEYSFSGN IKDGLQSSTT PVLHLEHDIV  300
RENEIGKDAS QAVEEFPKSS ALKELNPISP KKKRRKSEQS GEGELSCKRC NCKKSKCLKL  360
YCECFAAGVY CIEPCSCIDC FNKRIHEDVV LATRKQIESR NPLAFAPKVI RSSDSIIEVG  420
DDTSKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSSFEQ  480
DEENEISGKS ETAKTQQNVE LFNPAAPPST PIPVRQALAQ LPISSNNRLI PPVSHFHHGV  540
FGSSSSGIYN IRKPEMSMLS HSRIETITED VDDMPENHLI QSPITNMKAV VSPNSKRVSL  600
PHLDSSESTP WRRNGGGRKL ILSIPTFPSL THHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-17	348	468	12	120	Protein lin-54 homolog
5fd3_B	8e-17	348	468	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	334	KKKRR
2	330	335	KKKRRK
3	331	335	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00044	PBM	Transfer from AT3G22760	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0383.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099653	0.0	AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.
GenBank	AY128837	0.0	AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299680.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	R0I7X4	0.0	R0I7X4_9BRAS; Uncharacterized protein
STRING	Bostr.19424s0383.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0383.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]