PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0195.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 270aa    MW: 30994.8 Da    PI: 8.86
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-192067148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd ll+d+v+++G g+W+++ar  g++R +k+c++rw +yl
  Bostr.19424s0195.1.p 20 KGPWTAEEDRLLIDYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67
                          79********************************************97 PP
2Myb_DNA-binding52.61.1e-1673117147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Bostr.19424s0195.1.p  73 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                           7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8061571IPR017930Myb domain
SuperFamilySSF466891.25E-3017114IPR009057Homeodomain-like
SMARTSM007177.2E-171969IPR001005SANT/Myb domain
PfamPF002499.8E-182067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-242174IPR009057Homeodomain-like
CDDcd001671.69E-122267No hitNo description
PROSITE profilePS5129419.68272122IPR017930Myb domain
SMARTSM007174.7E-1572120IPR001005SANT/Myb domain
PfamPF002495.0E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2475121IPR009057Homeodomain-like
CDDcd001671.11E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSLWGVMGGG WGMVEEGWRK GPWTAEEDRL LIDYVRLHGE GRWNSVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ETIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KTKSPTNNAE KTKNRLFKRQ QFQQQRQMEL QQEQQLLQFN QIDMKKIMSF LDDDNNNGDN  180
TFSRSSSGEG SACYVPHQIT HSTTSSGCDP NTNRYYPAVP VTIPEANVNE DTAIWDGLWN  240
LDCEGQESFG GAACAPRKHC FQNMAIPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0195.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5502980.0AY550298.1 Arabidopsis thaliana MYB transcription factor (At3g24310) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102521.11e-152PREDICTED: myb-related protein 305
RefseqXP_013752037.11e-152myb-related protein 305-like
TrEMBLA0A397YIB71e-151A0A397YIB7_BRACM; Uncharacterized protein
TrEMBLM4DEV71e-151M4DEV7_BRARP; Uncharacterized protein
STRINGBostr.19424s0195.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-139myb domain protein 305