PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18722s0001.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bZIP

Protein Properties

Length: 264aa MW: 29462.3 Da PI: 6.8957

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18722s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.9e-11	182	223	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L Bostr.18722s0001.1.p 182 KRVKRILANRQSAQRSRVRKLQYITELERSVTSLQAEVSVLS 223 8999********************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-12	178	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.576	180	232	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.6E-9	180	227	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-12	182	232	No hit	No description
SuperFamily	SSF57959	4.29E-11	182	233	No hit	No description
CDD	cd14703	8.02E-24	183	233	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MAQLPPKIPN MTPHWPDFSS QKLSPFSTPT ATVVAAVTTA STAVQNPSWV DEFLDFSASR 60 RGNHRRSISD SIAFLEAPTV SIENHHFDRF DDEQFMSMFT DDEDLHSNPP HINNNNNVGP 120 TGSSSNTSTP SNSINDDNKN MNSNNNNNND EIQSRCKTER EDGTASNNNS GDSSGNRILD 180 PKRVKRILAN RQSAQRSRVR KLQYITELER SVTSLQAEVS VLSPRVAFLD HQRLLFNVDN 240 SALKQRIAAL SQDKIFKDGK FSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18722s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074657	1e-142	AY074657.1 Arabidopsis thaliana At2g42380/MHK10.10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294608.1	1e-143	basic leucine zipper 34
Swissprot	F4IN23	1e-141	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A1J3E438	1e-142	A0A1J3E438_NOCCA; Basic leucine zipper 34
STRING	Bostr.18722s0001.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-55	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bostr.18722s0001.1.p

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]