PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18473s0395.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 455aa    MW: 50478.4 Da    PI: 9.7602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18473s0395.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066890123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C++C+k F+r  nL+ H r H
  Bostr.18473s0395.1.p 68 FICEICNKGFKRDQNLQLHRRGH 90
                          89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-76790No hitNo description
Gene3DG3DSA:3.30.160.605.3E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.7E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8666890IPR007087Zinc finger, C2H2
SMARTSM003550.0116890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355120110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-7140165No hitNo description
SMARTSM00355200145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMMPDDHHHL SFPSYVLHQE HITPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN  60
SLMATNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKDQVKKKVY ICPEKTCVHH  120
DAARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF  180
SRKDSFITHR AFCDALAEES ARFVSVPPAA AAAASTYLNN APDAEVNLGN INPNHQHGQL  240
NTTSSQVLDQ PGFNIHRNNI AFLGQTFTNE LPLPTNVLAS PSPRSASNSL QNLWHLQGQS  300
SHQWLLNENN NNNILQRGIS KNEEEHEIKK VTSSGSLFSS EARNSTNNYN QNGGQIASMS  360
ATALLQKAAQ MGSKRSSSSS NNSKAFGLMT SSIFNNKQTE NIKTKDFDEG GFTRDFLGVG  420
SQHQPWPLLM VNHNLPDSSP PATVNGTPTA DRNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35141206368Zinc finger protein JACKDAW
5b3h_F2e-35141206368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18473s0395.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503173.10.0PREDICTED: protein indeterminate-domain 9 isoform X1
RefseqXP_019100169.10.0PREDICTED: protein indeterminate-domain 9 isoform X2
SwissprotQ944L30.0IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLD7LNN70.0D7LNN7_ARALL; Zinc finger family protein
STRINGBostr.18473s0395.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]