PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Bostr.18473s0167.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 275aa MW: 30436.1 Da PI: 4.8031

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18473s0167.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	157	203	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++YI+sLq Bostr.18473s0167.2.p 157 HSLAERARRERISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 203 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.25E-10	150	207	No hit	No description
SuperFamily	SSF47459	6.8E-17	150	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.256	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	153	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-8	157	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-8	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSDPELLNPV MDPPIVDESP FSEIWPFSVN YGIQLPLNSG QDFTSRGELF GYSGNNYISA 60 AEESTVTELT GGGRKRRPLT SQDESSKMLS SCTSVTRLKE SSKKKMKVCG SEGENEDGLR 120 PECETSSGCG SKATEEKSPP KDYIHVRARR GQATDRHSLA ERARRERISE RMKFLQDLIP 180 GCNKIIGKAL VLDEIINYIQ SLQRQVEFLS MKLEVINSDV STGPKVGMFP SGDLNTLPIE 240 IHQTLFDQQE ADETRGSQPD WLHMGIDGNF DQAA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18473s0167.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291662.1	1e-167	transcription factor bHLH79
Swissprot	Q9LV17	1e-114	BH079_ARATH; Transcription factor bHLH79
TrEMBL	R0HHA9	1e-166	R0HHA9_9BRAS; Uncharacterized protein
STRING	Bostr.18473s0167.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-110	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.18473s0167.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]