PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18351s0439.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 359aa MW: 39742.2 Da PI: 7.0087

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18351s0439.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.5e-08	123	143	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck+Gd C F+Hg Bostr.18351s0439.1.p 123 ACPEFRK-GGCKRGDACEFSHG 143 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.4E-5	118	144	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.521	119	145	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-4	122	145	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.2E-6	123	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	0.001	150	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.53	153	176	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.568	153	177	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MMIGESRRAF NPTVHIPPWP LNEDLTASDI YGSPDGGNSM MEALAALQRY LPSNEPDPDL 60 DPDLSGPDSP IDAYSCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKYHYS 120 GTACPEFRKG GCKRGDACEF SHGVFECWLH PARYRTQPCK DGGNCRRRVC FFAHSPDQLR 180 VLPNQSPDRV DSFDGLSPIR RAAFQFSISP SSNSPPVSPR GDSDSSCSLL SRSHGYNLGN 240 DVVASLRNLQ LNKVKSLPSS YNNQIGGHGS GFGSPRGSVL GPGFRSLPTT PTRPGYMNSW 300 ENVQEEEPAM ERVESGRELR AKLFEKLSKE NCMGRVDPDP DQGAGDAPDV GWVSDLVM*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MMIGESRRAF NPTVHIPPWP LNEDLTASDI YGSPDGGNSM MEALAALQRY LPSNEPDPDL  60
DPDLSGPDSP IDAYSCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKYHYS  120
GTACPEFRKG GCKRGDACEF SHGVFECWLH PARYRTQPCK DGGNCRRRVC FFAHSPDQLR  180
VLPNQSPDRV DSFDGLSPIR RAAFQFSISP SSNSPPVSPR GDSDSSCSLL SRSHGYNLGN  240
DVVASLRNLQ LNKVKSLPSS YNNQIGGHGS GFGSPRGSVL GPGFRSLPTT PTRPGYMNSW  300
ENVQEEEPAM ERVESGRELR AKLFEKLSKE NCMGRVDPDP DQGAGDAPDV GWVSDLVM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18351s0439.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005169	0.0	AC005169.3 Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence.
GenBank	AY084253	0.0	AY084253.1 Arabidopsis thaliana clone 101255 mRNA, complete sequence.
GenBank	AY136395	0.0	AY136395.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g19810) mRNA, complete cds.
GenBank	BT002114	0.0	BT002114.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g19810) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297982.1	0.0	zinc finger CCCH domain-containing protein 20
Swissprot	O82199	0.0	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	R0HZ65	0.0	R0HZ65_9BRAS; Uncharacterized protein
STRING	Bostr.18351s0439.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	0.0	C3H family protein

Link Out ? help Back to Top
Phytozome	Bostr.18351s0439.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]