PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0303.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ZF-HD
Protein Properties Length: 268aa    MW: 30256.9 Da    PI: 9.3081
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0303.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.13.2e-3178132358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           ++rY+eC+kNhAas Ggh+vDGCgEfm+s geegt+++l CaAC+CHR+FHR+e +
  Bostr.18351s0303.1.p  78 RARYRECQKNHAASSGGHVVDGCGEFMSS-GEEGTVESLLCAACDCHRSFHRKERD 132
                           689*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-3966141IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2879131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-3080130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.78681130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.97E-18190264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28194265IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-30203260IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEVREKKDEK MEMVRRNPSA LDHHRRLPPY TCPQTTDKEK RTTKRNGSDP DPDLDTNPIS  60
IAPAARSYAR PQTTSPGRAR YRECQKNHAA SSGGHVVDGC GEFMSSGEEG TVESLLCAAC  120
DCHRSFHRKE RDGLFVVNFN SFGHSQRPLV SRHVSPIMMS FGGDGGGGGC GGGPAGSSTE  180
DLNKFHQSFS GNGVDQFHQY QPKKRFRTKF NEEQKEKMME FAEKIGWRMT KQEDDEVNRF  240
CREINVKRQV FKVWMHNNKQ AAKKKDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-202042611875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0303.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064391e-171AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankAY0882551e-171AY088255.1 Arabidopsis thaliana clone 4845 mRNA, complete sequence.
GenBankCP0026851e-171CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489539.11e-173PREDICTED: zinc-finger homeodomain protein 6
SwissprotQ9ZPW71e-165ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLD7LBB21e-169D7LBB2_ARALL; ATHB24
STRINGBostr.18351s0303.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-162homeobox protein 24