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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.18351s0299.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
bHLH |
| Protein Properties |
Length: 336aa MW: 37636.5 Da PI: 6.1851 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.18351s0299.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 25.4 | 2.5e-08 | 194 | 240 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++ Lq
Bostr.18351s0299.1.p 194 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 240
999**********************9....677***************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009299 | Biological Process | mRNA transcription |
| GO:0009735 | Biological Process | response to cytokinin |
| GO:0009826 | Biological Process | unidimensional cell growth |
| GO:0043425 | Molecular Function | bHLH transcription factor binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MLEGLVSHES FSLNSMDMSV LESLKWLQQQ QQQLQQVVSQ SSNNSPELPQ ILQFHGSNND 60
ELLQSSFSQF QMLGSGFGPN YNMGYVPPHE AMDGCISRTS SCQMEVLLRN GEEEGAISLK 120
NKRKPEVKTR EEEKTEKKIK VEAETESSMK GKSKMRNTEA SSDTSKATLK EVSEIPKLDY 180
IHVRARRGQA TDRHSLAERA RREKISKKMK YLQDIVPGCN KVTGKAGMLD EIINYVQCLQ 240
RQVEFLSMKL AVLNPELELA VEDVSVKQFQ AYFTNVVGSK HSIMVDVPLF PLDQQGSLDL 300
SAINQNQATS VEAPSASWET QSQSHYNTSS LGFQY*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF412099 | 0.0 | AF412099.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. |
| GenBank | AY078030 | 0.0 | AY078030.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. |
