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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.1774s0027.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28480.5 Da PI: 4.7112 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.2e-13 | 191 | 236 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ ++ + a++Le+AveY+k Lq Bostr.1774s0027.2.p 191 SIAERVRRTRISDRIRRLQELVPNM----DRQTNTADMLEEAVEYVKALQ 236 689*********************7....699*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.824 | 185 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 188 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.27E-11 | 189 | 240 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-16 | 190 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-10 | 191 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 191 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MQSTHIGDGS GDGGGGGGEM SRSGLSRIRS APATWIETLL EDDEEEGLKP NLCLTELLTG 60 NNSGGIITSR DSFEFPSSVE QGLYNNNHQG GGFHRQNSSP ADFLSGSDAG TDGFFSNFGI 120 PANYDYLSTN VDISPTKRSR DMEAQFSSQL KEEQMSGGVS EMMDMNMDKL LEDSVPCRVR 180 AKRGCATHPR SIAERVRRTR ISDRIRRLQE LVPNMDRQTN TADMLEEAVE YVKALQSQIQ 240 ELTEEQKRCR CKPKEEQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.1774s0027.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411791 | 0.0 | AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. | |||
GenBank | AY093794 | 0.0 | AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500031.1 | 1e-154 | PREDICTED: transcription factor bHLH80-like | ||||
Swissprot | Q9C8P8 | 1e-154 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A178WC48 | 1e-151 | A0A178WC48_ARATH; FBH1 | ||||
STRING | Bostr.1774s0027.1.p | 1e-162 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-144 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.1774s0027.2.p |