PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.1774s0027.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 286aa    MW: 31429.7 Da    PI: 5.017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.1774s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12191236655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     ++  + a++Le+AveY+k Lq
  Bostr.1774s0027.1.p 191 SIAERVRRTRISDRIRRLQELVPNM----DRQTNTADMLEEAVEYVKALQ 236
                          689*********************7....699*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.824185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-15188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-12189240No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15190254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-10191236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQSTHIGDGS GDGGGGGGEM SRSGLSRIRS APATWIETLL EDDEEEGLKP NLCLTELLTG  60
NNSGGIITSR DSFEFPSSVE QGLYNNNHQG GGFHRQNSSP ADFLSGSDAG TDGFFSNFGI  120
PANYDYLSTN VDISPTKRSR DMEAQFSSQL KEEQMSGGVS EMMDMNMDKL LEDSVPCRVR  180
AKRGCATHPR SIAERVRRTR ISDRIRRLQE LVPNMDRQTN TADMLEEAVE YVKALQSQIQ  240
ELTEEQKRKK NKKSKAQANH LEEGKHDVAE VAQGVTRKDT AYGCE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.1774s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117910.0AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937940.0AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500031.11e-148PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-147BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A178WC481e-145A0A178WC48_ARATH; FBH1
STRINGBostr.1774s0027.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-135bHLH family protein