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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.15774s0334.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 221aa MW: 25636.8 Da PI: 10.0256 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.15774s0334.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 89 | 2.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRr g++KKA+ELSvLCda+va ++fs++g+lyeyss
Bostr.15774s0334.1.p 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAVVFSQSGRLYEYSS 59
68***********************************************96 PP
|
| 2 | K-box | 65.3 | 2.1e-22 | 85 | 170 | 11 | 96 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
e+ ++l++e++++ k+i+ L+ R+l+G++L+s+s+ eLq++ +q+eksl+ +Rs+K el+ +q+e+l++ke+el +e k+L +
Bostr.15774s0334.1.p 85 ERYLQELKKEMDRMVKKIDHLEVLRRKLMGQGLGSCSVAELQEIDTQIEKSLRLVRSRKAELYADQLEKLKQKERELLNERKRLCE 170
566899**************************************************************************999865 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.328 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.06E-32 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 9.16E-42 | 3 | 75 | No hit | No description |
| PRINTS | PR00404 | 4.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 13.818 | 88 | 179 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 3.3E-21 | 89 | 171 | IPR002487 | Transcription factor, K-box |
| Gene3D | G3DSA:3.30.70.890 | 6.3E-4 | 93 | 133 | IPR013750 | GHMP kinase, C-terminal domain |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAVVFSQ SGRLYEYSSS 60
EMEKIIERYG KFSNDFFVAE RPQVERYLQE LKKEMDRMVK KIDHLEVLRR KLMGQGLGSC 120
SVAELQEIDT QIEKSLRLVR SRKAELYADQ LEKLKQKERE LLNERKRLCE EQIKERLMRP 180
VVPLTLQLIY DKGKTEGGGR TKHSSEVETD LFIGLPVTRL *
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| Functional Description ? help
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| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY141220 | 0.0 | AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds. |
